Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04328 ATGGCCAAGTTCATTGTGAGAAATAGTAACAAAAAGAAGAGTGGAGGTAGCATTGTGAAGCTCATTGAGAAGCTACAAAAGAAAATCTTGCTAGGGAGAAACAAATCAACATCAACCTATGTGCCTGAGGATGTGAAGGAAGGACATTTTGCTGTGATAGCTGAGGATAGAAAAGAAGATCAAGAACCAAAGAGATTTGTGTTACCATTAAGCTGTTTAACAAATCCAACATTTGTTAGGCTATTGGAGCAAGCAGAAGAAGAGTATGGTTTTGATCATGAAGGTGCACTAACCATTCCTTGTAAGCCTAGTGAACTTCACAAGATGTTGCAACAATGGCAACAAGAAGAATACAATTCCCCCAATAACTCCATGGTTTTTCAAAACTATTGA 393 0.3791 MAKFIVRNSNKKKSGGSIVKLIEKLQKKILLGRNKSTSTYVPEDVKEGHFAVIAEDRKEDQEPKRFVLPLSCLTNPTFVRLLEQAEEEYGFDHEGALTIPCKPSELHKMLQQWQQEEYNSPNNSMVFQNY 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04328 130 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 27 109 IPR003676 GO:0009733
Trre11g04328 130 Pfam Auxin responsive protein 33 110 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04328 Trre-Chr11 55819369 55819761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04328 42 102 Calmodulin-binding Proteins AT3G43120 50.820 1.14e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04328 - K14488 cam:101506786 174.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04328 11 55819369 55819761 Trre11g04328 11 55819369 55819761 ECH