Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04325 ATGTCTCAACCTGAATTATCCGACTCAAAATCAGTGAAGAAGGACTTTTCCACCGCGATTCTAGAACGCAAGAAGTCGCCAAACAGGCTTGTTGTGGATGAAGCACTTAACGATGACAACTCTGTTGTTGTCATGCACCCACAAACTATGGAAAAGTTGGGGATTTTCAGAGGTGACACTATTCTCATCAAGGGAAAGAAAAGGAAGGATACTATTTGTATAGCTCTTGCTGAGGATACTTGTGAGGAGCCTAAGATTAGGATGAACAAAGTTGTGAGGTCGAATTTGAGGGTTCGACTTGGAGATGTTGTGTCTGTGCACCAGTGTCCTGATGTCAAGTATGGGAAACGTGTACACATTCTTCCTATTGATGATACCATCGAGGGCATCACTGGCAATCTCTTTGATGCTTTCTTGAAACCCTATTTCTTGGAGGCTTATCGTCCTGTCAGAAAAGGAGATCTATTTCTTGTGCGGGGAGGGATGAGAAGTGTAGAGTTTAAGGTCATTGAAACTGATCCTGGGGAGTACTGTGTGGTTGCTCCAGACACTGAGGTCTTTTGCGAAGGGGAACCTGTGAAAAGAGAGGATGAAGATAGGCTTGATGAAGTCGGTTATGATGATGTGGGTGGTGTTAGGAAGCAAATGGCACAGATTCGTGAGTTGGTTGAGCTTCCACTAAGGCATCCCCAACTTTTTAAGTCAATTGGTGTGAAACCACCCAAAGGAATTTTGCTATATGGACCCCCGGGTTCTGGAAAGACCTTAATAGCAAGAGCTGTTGCTAATGAAACTGGAGCTTTCTTCTTTTGTATTAATGGACCAGAGATTATGTCGAAACTGGCTGGAGAGAGTGAAAGCAATCTTAGGAAAGCATTTGAGGAAGCTGAAAAAAATGCACCATCCATCATCTTTATTGATGAAATTGATTCTATTGCACCAAAGCGGGAGAAGACACACGGTGAAGTTGAAAGAAGGATTGTTTCACAACTTTTGACTCTTATGGATGGATTAAAATCTCGTGCTCATGTTATTGTTATGGGTGCCACTAATCGTCCGAATAGCATTGACCCAGCATTGAGAAGGTTTGGTAGATTTGATAGGGAAATCGATATAGGTGTTCCAGATGAAATTGGGCGACTTGAAGTCCTTCGCATACATACCAAAAACATGAAGCTCTCCGATGATGTTGATTTGGAGAGAATTTCAAAAGATACTCATGGGTATGTTGGTGCCGACCTTGCTGCTCTTTGCACCGAAGCTGCTTTGCAATGCATTAGGGAGAAGATGGACCTTATTGACTTAGAGGATGAGACTATTGATGCCGAAATACTAAATTCCATGGCAGTTACAAATGAGCATTTCCATACTGCACTTGGAACAAGCAACCCATCAGCTTTACGTGAAACTGTAGTTGAGGTTCCTAACGTCAGCTGGGAGGACATAGGAGGCCTTGAGAATGTCAAGCGTGAACTGCAAGAGACTGTTCAATATCCCGTTGAGCACCCGGAAAAGTTTGAGAAGTTTGGGATGTCACCGTCAAAAGGAGTTCTCTTCTATGGTCCTCCCGGATGTGGAAAAACTTTGTTAGCCAAAGCAATTGCCAATGAATGTCAAGCTAACTTCATCAGTGTGAAAGGTCCAGAATTGCTTACAATGTGGTTTGGTGAAAGTGAAGCCAACGTTAGGGAAATTTTTGACAAGGCTAGACAATCAGCTCCATGTGTCCTCTTTTTTGATGAGCTCGACTCCATTGCCACTCAGAGAGGGGGCAGTAGTGGTGATGCTGGTGGTGCTGCTGACAGAGTTCTAAATCAACTTCTGACAGAGATGGATGGCATGTCTGCCAAAAAGACTGTATTCATTATTGGGGCCACTAACAGACCTGACATCATCGATTCAGCACTTCTTCGGCCAGGCCGTCTAGATCAGTTGATCTATATTCCTCTTCCTGATGAGGATTCCCGTCATTCGATTTTCAAGTCCTGCTTGAGGAAGTCACCGGTCGCGAAAGATGTTGATTTGAGAGCATTGGCCAAGTATACTCAAGGTTTCAGTGGTGCCGACATTACAGAAATATGCCAGCGAGCATGCAAATATGCTATAAGAGAAAACATAGAGAAGGACATAGAGCAAGAGAGGAAGAGAAAGGAAAACCCCGAGGCCATGGATGAAGACTTTGTCGACGATGAAGTTGCAGAGATCAAAGCGGCTCATTTTGAGGAGTCGATGAAGTATGCACGTAGGAGTGTCAGTGACGCCGATATACGCAAATATCAGGCATTTGCTCAAACCTTGCAACAATCGAGGGGATTTGGAAGTGAATTTAGGTTTGCAGATAATAGGACTACCGGATCCGACCCTTTTGCAACAACAACCGCTGCTGGTGGGGCTGATGAAGATGATCTGTATAGTTAG 2418 0.44 MSQPELSDSKSVKKDFSTAILERKKSPNRLVVDEALNDDNSVVVMHPQTMEKLGIFRGDTILIKGKKRKDTICIALAEDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEVFCEGEPVKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLSDDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDLIDLEDETIDAEILNSMAVTNEHFHTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGSSGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRHSIFKSCLRKSPVAKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEQERKRKENPEAMDEDFVDDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFADNRTTGSDPFATTTAAGGADEDDLYS 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04325 805 PANTHER AAA-FAMILY ATPASE 401 769 - -
Trre11g04325 805 Gene3D - 654 763 - -
Trre11g04325 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 475 764 IPR027417 -
Trre11g04325 805 Gene3D - 7 111 - -
Trre11g04325 805 SMART AAA_5 513 652 IPR003593 GO:0016887
Trre11g04325 805 SMART AAA_5 240 376 IPR003593 GO:0016887
Trre11g04325 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 465 IPR027417 -
Trre11g04325 805 CDD RecA-like_CDC48_r1-like 208 373 - -
Trre11g04325 805 FunFam Cell division control 48 112 208 - -
Trre11g04325 805 FunFam Cell division control 48 375 466 - -
Trre11g04325 805 SUPERFAMILY Cdc48 domain 2-like 111 203 IPR029067 -
Trre11g04325 805 Gene3D - 375 466 - -
Trre11g04325 805 FunFam Transitional endoplasmic reticulum ATPase 205 373 - -
Trre11g04325 805 ProSitePatterns AAA-protein family signature. 344 362 IPR003960 GO:0005524|GO:0016887
Trre11g04325 805 Pfam Cell division protein 48 (CDC48), N-terminal domain 29 110 IPR003338 -
Trre11g04325 805 SMART CDC48_2_2 129 195 IPR004201 -
Trre11g04325 805 FunFam Transitional endoplasmic reticulum ATPase 467 650 - -
Trre11g04325 805 MobiDBLite consensus disorder prediction 777 791 - -
Trre11g04325 805 CDD RecA-like_CDC48_r2-like 488 648 - -
Trre11g04325 805 Gene3D - 112 208 - -
Trre11g04325 805 Pfam AAA+ lid domain 396 438 IPR041569 -
Trre11g04325 805 Pfam AAA+ lid domain 672 713 IPR041569 -
Trre11g04325 805 Pfam Cell division protein 48 (CDC48), domain 2 130 194 IPR004201 -
Trre11g04325 805 FunFam Transitional endoplasmic reticulum ATPase 7 111 - -
Trre11g04325 805 MobiDBLite consensus disorder prediction 777 805 - -
Trre11g04325 805 SMART CDC48_N_2 29 112 IPR003338 -
Trre11g04325 805 SUPERFAMILY ADC-like 25 109 IPR009010 -
Trre11g04325 805 ProSitePatterns AAA-protein family signature. 620 638 IPR003960 GO:0005524|GO:0016887
Trre11g04325 805 NCBIfam CDC48 family AAA ATPase 30 767 IPR005938 GO:0016787
Trre11g04325 805 Gene3D - 209 373 IPR027417 -
Trre11g04325 805 Pfam ATPase family associated with various cellular activities (AAA) 244 373 IPR003959 GO:0005524|GO:0016887
Trre11g04325 805 Pfam ATPase family associated with various cellular activities (AAA) 517 650 IPR003959 GO:0005524|GO:0016887
Trre11g04325 805 Gene3D - 467 650 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04325 Trre-Chr11 55782976 55786755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04325 446 709 Calmodulin-binding Proteins AT3G56690 48.485 2.52e-80 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04325 K13525 - gmx:100783508 1512.66