Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04311 ATGCATCATCAGCAACAGCTACACTATGGTTCATTTCCTCATTCTCCTCAACATAAACAACAGTACTATTCTGAGCTTATAAGTGATTTTGGAAATTGGAAAAACAGAACTGTTCCACATCAAGTCACTGTCACTGATTGGTTTCTAAATAGTGAAACTAATTCTCTTTCATCTTTATATGGTGAAATGCATCAGAATCATTCTCTGCAAGATATTGTCAATAATGCAGGTCAAGGAAATTGTGTAGGAAATGCTTCTGAAATTAAGCTTCAACAAAATCAACAAAGCTTATCATTATCACTTACATCAAATATTTCTCAGTTTGATCAAGAGGGAACTTCAACTTCAAGAGATGAATTTCAAACTATGAAGTATGTGAAGCCTTCAATCATTTCTAAAGATTGTAGAAAATCACTTCAAGACTTAGTGGTTGGAATGATACCAAATTCAAAGATTAATACTATTGGTCCACTTGGTCCTTTTACTGGTTATGCTACTATTCTTAAGAATTCAAGATTCTTAAAGATTGCTCAAAATTTGTTAGATGAGTATTGTTGTTCAAAATTTGTGACAACATTTGATGTTTTAGACACTGAGGTTGCTTCTAAAGGAAGTAATTATTCATGTTCTTCATCATCTATGTTTCATAGTGCTGATTGGGGGGATAGAAGTAACTTTGGTGTTTCTATGAGGCCAGATTATCAACAGATTAAAGCTAAGCTTATGTGCATGCAAGAGGAGGTCAGCAGGCGATACAAGCAGTACCATCAACAAATGCAAATGGTTTTTGCATCATTTGAATCAGTAGCAGGTCTTAATTCAGCTACTCCTTACATCACCTTGGCTTTGAAGTCAGTGTCGAAACACTTCAAAAGCCTAAACAATGTAATTTCAAATCAGCTCAAACTTATAAGTGAAGTCTTACGAAATGATCCGTCAATACTGACCACAACCAATAGTGCCAAACTAGTTGACACTAATATGGCAAGCCTAAGGTGCATGGACCAAAGCATAAAAATGAACAAACTTGATAAGGTTCCGAAAGGTTTTCTTGATCCGCAACAACAAAATCTTTGGAAGCCTCAGAGAGGCTTCCCGGAACATGCGGTGGCGATCCTTAGAGCTTGGTTGTTTGAACATTTTCTTCATCCTTATCCAACAGACATCGACAAAAACATGTTGGCTACTCAGACAGGTCTTTCGCGAAACCAGGTATCAAATTGGTTTATCAATGCTCGAGTTCGCTTGTGGAAGCCGATGGTTGAGGAAGTACACATGCTTGACAAAAAAACAACAGGTACCGATGAGAGTTCTAATTCAAACGAGGGAACTTTTGCCACCGTAGGTAGTTCTAACCAGCCTCGAATGGATAAGGAATCGCACAAGTTCTTTATGCAGTCAATACCTGAAGACCAAATTCAATATATGGGATTTGGTTCAATATTTATAGATAAAAATTCCGAGGAAAATGAAGCGGAACAATGGAGACAAGAGAAGCGGTCGAAATTAGAATGCGGAATGAGTTCAAGAATGGATGGAACATTGATGGATTTTTTACCATATAGACATAGTGGACATGATGTTGTGCAATCACTTGGATTAGATCTGTTTCATTGA 1617 0.3698 MHHQQQLHYGSFPHSPQHKQQYYSELISDFGNWKNRTVPHQVTVTDWFLNSETNSLSSLYGEMHQNHSLQDIVNNAGQGNCVGNASEIKLQQNQQSLSLSLTSNISQFDQEGTSTSRDEFQTMKYVKPSIISKDCRKSLQDLVVGMIPNSKINTIGPLGPFTGYATILKNSRFLKIAQNLLDEYCCSKFVTTFDVLDTEVASKGSNYSCSSSSMFHSADWGDRSNFGVSMRPDYQQIKAKLMCMQEEVSRRYKQYHQQMQMVFASFESVAGLNSATPYITLALKSVSKHFKSLNNVISNQLKLISEVLRNDPSILTTTNSAKLVDTNMASLRCMDQSIKMNKLDKVPKGFLDPQQQNLWKPQRGFPEHAVAILRAWLFEHFLHPYPTDIDKNMLATQTGLSRNQVSNWFINARVRLWKPMVEEVHMLDKKTTGTDESSNSNEGTFATVGSSNQPRMDKESHKFFMQSIPEDQIQYMGFGSIFIDKNSEENEAEQWRQEKRSKLECGMSSRMDGTLMDFLPYRHSGHDVVQSLGLDLFH 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04311 538 SMART prehox3 162 299 IPR006563 -
Trre11g04311 538 SMART HOX_1 359 423 IPR001356 GO:0003677
Trre11g04311 538 Pfam Homeobox KN domain 376 415 IPR008422 GO:0003677|GO:0006355
Trre11g04311 538 MobiDBLite consensus disorder prediction 433 454 - -
Trre11g04311 538 SUPERFAMILY Homeodomain-like 361 424 IPR009057 -
Trre11g04311 538 Gene3D - 362 424 - -
Trre11g04311 538 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 79 440 - -
Trre11g04311 538 CDD homeodomain 359 420 IPR001356 GO:0003677
Trre11g04311 538 ProSiteProfiles 'Homeobox' domain profile. 356 419 IPR001356 GO:0003677
Trre11g04311 538 MobiDBLite consensus disorder prediction 429 456 - -
Trre11g04311 538 Pfam Associated with HOX 167 298 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04311 Trre-Chr11 55632729 55635131 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04311 102 428 Homeobox Transcription Factor Family AT5G02030 44.012 8.14e-70 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre11g04311 POX 1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04311 - - psat:127083522 644.425