Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04310 ATGATGCATCATCAGCAACAGCTACACTATGGTTCATTTCCTCATTCTCCTCAACATAAACAACAGTACTATTCTGAGCTTATAAGTGATTTTGGAAATTGGAAAAACAGAACTGTTCCACATCAAGTCACTGTCACTGATTGGTTTCTAAATAGTGAAACTAATTCTCTTTCATCTTTATATGGTGAAATGCATCAGAATCATTCTCTGCAAGATATTGTCAATAATGCAGGTCAAGGAAATTGTGTAGGAAATGCTTCTGAAATTAAGCTTCAACAAAATCAACAAAGCTTATCATTATCACTTACATCAAATATTTCTCAGTTTGATCAAGAGGGAACTTCAACTTCAAGAGATGAATTTCAAACTATGAAGTATGTGAAGCCTTCAATCATTTCTAAAGATTGTAGAAAATCACTTCAAGACTTAGTGGTTGGAATGATACCAAATTCAAAGATTAATACTATTGGTCCACTTGGTCCTTTTACTGGTTATGCTACTATTCTTAAGAATTCAAGATTCTTAAAGATTGCTCAAAATTTGTTAGATGAGTATTGTTGTTCAAAATTTGTGACAACATTTGATGTTTTAGACACTGAGGTTGCTTCTAAAGGAAGTAATTATTCATGTTCTTCATCATCTATGTTTCATAGTGCTGATTGGGGGGATAGAAGTAACTTTGGTGTTTCTATGAGGCCAGATTATCAACAGATTAAAGCTAAGCTTATGTGCATGCAAGAGGAGGTCAGCAGGCGATACAAGCAGTACCATCAACAAATGCAAATGGTTTTTGCATCATTTGAATCAGTAGCAGGTCTTAATTCAGCTACTCCTTACATCACCTTGGCTTTGAAGTCAGTGTCGAAACACTTCAAAAGCCTAAACAATGTAATTTCAAATCAGCTCAAACTTATAAGTGAAGTCTTACGAAATGATCCGTCAATACTGACCACAACCAATAGTGCCAAACTAGTTGACACTAATATGGCAAGCCTAAGGTGCATGGACCAAAGCATAAAAATGAACAAACTTGATAAGGTTCCGAAAGGTTTTCTTGATCCGCAACAACAAAATCTTTGGAAGCCTCAGAGAGGCTTCCCGGAACATGCGGTGGCGATCCTTAGAGCTTGGTTGTTTGAACATTTTCTTCATCCTTATCCAACAGACATCGACAAAAACATGTTGGCTACTCAGACAGGTCTTTCGCGAAACCAGGTATCAAATTGGTTTATCAATGCTCGAGTTCGCTTGTGGAAGCCGATGGTTGAGGAAGTACACATGCTTGACAAAAAAACAACAGGTACCGATGAGAGTTCTAATTCAAACGAGGGAACTTTTGCCACCGTAGGTAGTTCTAACCAGCCTCGAATGGATAAGGAATCGCACAAGTTCTTTATGCAGTCAATACCTGAAGACCAAATTCAATATATGGGATTTGGTTCAATATTTATAGATAAAAATTCCGAGGAAAATGAAGCGGAACAATGGAGACAAGAGAAGCGGTCGAAATTAGAATGCGGAATGAGTTCAAGAATGGATGGAACATTGATGGATTTTTTACCATATAGACATAGTGGACATGATGTTGTGCAATCACTTGGATTAGATCTGTTTCATTGA 1620 0.3698 MMHHQQQLHYGSFPHSPQHKQQYYSELISDFGNWKNRTVPHQVTVTDWFLNSETNSLSSLYGEMHQNHSLQDIVNNAGQGNCVGNASEIKLQQNQQSLSLSLTSNISQFDQEGTSTSRDEFQTMKYVKPSIISKDCRKSLQDLVVGMIPNSKINTIGPLGPFTGYATILKNSRFLKIAQNLLDEYCCSKFVTTFDVLDTEVASKGSNYSCSSSSMFHSADWGDRSNFGVSMRPDYQQIKAKLMCMQEEVSRRYKQYHQQMQMVFASFESVAGLNSATPYITLALKSVSKHFKSLNNVISNQLKLISEVLRNDPSILTTTNSAKLVDTNMASLRCMDQSIKMNKLDKVPKGFLDPQQQNLWKPQRGFPEHAVAILRAWLFEHFLHPYPTDIDKNMLATQTGLSRNQVSNWFINARVRLWKPMVEEVHMLDKKTTGTDESSNSNEGTFATVGSSNQPRMDKESHKFFMQSIPEDQIQYMGFGSIFIDKNSEENEAEQWRQEKRSKLECGMSSRMDGTLMDFLPYRHSGHDVVQSLGLDLFH 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04310 539 CDD homeodomain 360 421 IPR001356 GO:0003677
Trre11g04310 539 Gene3D - 363 425 - -
Trre11g04310 539 Pfam Associated with HOX 168 299 IPR006563 -
Trre11g04310 539 ProSiteProfiles 'Homeobox' domain profile. 357 420 IPR001356 GO:0003677
Trre11g04310 539 MobiDBLite consensus disorder prediction 430 457 - -
Trre11g04310 539 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 78 441 - -
Trre11g04310 539 SMART HOX_1 360 424 IPR001356 GO:0003677
Trre11g04310 539 SUPERFAMILY Homeodomain-like 362 425 IPR009057 -
Trre11g04310 539 MobiDBLite consensus disorder prediction 434 455 - -
Trre11g04310 539 Pfam Homeobox KN domain 377 416 IPR008422 GO:0003677|GO:0006355
Trre11g04310 539 SMART prehox3 163 300 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04310 Trre-Chr11 55632729 55635134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04310 103 429 Homeobox Transcription Factor Family AT5G02030 44.012 7.67e-70 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre11g04310 POX 1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04310 - - psat:127083522 644.425