Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04304 ATGAAGCGTCAACTCAAAGTTTCTGTTGCACTTGTTATTAGCTTGCTATGGTTTCAGCACTCACTTTGTGCAAATGAACCTTCTGATTCTGGTCTAAACAAGTGGAAATGTAGATGTTCTTTCCGAGTTGACCAGAAAAACACTATTTCTAATTGTTCCAAGTCATGTGATTGCCATTCAGAGACTGCATCCATATGGACATGCATATGCGATTCAAATGGCTTTCCTGAAGTGGCTGCAGGAAGCCATAATCCTAATTGCTTTATTGCCTGCAATTGCATCTGGGGAACTGCTAAGATGTCAATAGGTTCAAAGAAACACATTTCGAGCAAGATTGTAATAACCATTATAGTAATGTGTGTTACATGCACAACTATTGCATTTCTAGTCTCAGTTCTATGTTATGTCCGCCGAAGGAAGAGGCATCATCCTATTCAATCACCAATGATATCGTCATCAGATAAGGAAACAAGTTATAGTAGTACCAGCAACTTCATTAGTCAGAGGACTTCTTTTGTGCCAGATATAAAAGGAGCTATTAGTTCTCCTATAAGTCATATTACAAGATGCTTTCAAAAAGCCTCTATCTTGTTTGGGAATCAAAAAGAAACATTTCATGGAAATATTATTCAGTTTTCATTTGCTGATCTGGAAAATGCCACTGAAAACTTTTCAGCTTCCAACCTTATTGGACTAGGTGGAAGTAGTTATGTATACCGTGGTCGACTGGAAAATGGTAGTAATGTGGCAGTCAAGCGACTTAAAAACCAAGGAGGACCTGAAGCAGACACTGAATTTTTCACAGAGATTGAACTATGGTCTAGACTTCATCATTGTCATCTGGTGCCATTGATTGGATACTGCTCAGAATTAAAAGGAAAAACTGTTCAGAGGTTACTAGTGTTTGACTACATGAGTAACGGAAATTTGAGGGACCGTTTAGATGGAGTTTTCGGAAAAAATATGGATTGGTCTACTCGTGTTACAATTGCATTAGGAGCTGCAAGGGGCTTAGAGTATCTCCATGAAGCAGCTGCTCCAAGAATTCTCCACAGAGATGTCAAATCAACAAACATTCTTCTTGATAAAAATTGGCAAGCAAAAATAACTGATCTTGGTTTGGCTAAAGACTTGAGATCTGGTGACCTCGCCAGTTGTTCAGATTCTTCACAAAAAATGAAGGGGACATTTGGCTATTTTGCACCTGAGTATGCAATTGTTGGGAGAGCCTCTATTGAGTCTGATGTCTTCAGTTTCGGTGTGGTTCTTCTCGAGCTTATCAGTGGTCGCCAACCAATCCTTAAATCTGCAGGCAAAGAAGAAAGCCTTGTTGTATGGGCTACTCCTCGGTTATATGACAGTAGGCGAGTAATTACAGAGTTGGCTGATCCACAATTGAAAGGAAACTTCCCAGAAGATGAGGTGTATATAATGGCAAATCTAGCAAAGGAGTGCTTATTGTTGGATCCTGATACTAGACCAACTATGAGTGAAGTTGTTCTAATTCTTTCAAGTATTTCCCGAACCAAATCTAGAAGGAGAAGATACAATCAATTGTGCCTTTTTCAGGTGAACACATTTGCCGAGGAACCAGATGATGCAGAGAAGCAAAGACAAGCTTCATGGAGAAGATTTCCGCCTCATAATTCATTACCACGAGGTACTGACTACAACCTTCGTGTTGAAAAAGAAGATAAAGACGTAGATACAATTTCAACGGAGTACATGAAGAGTTTGATCCTCTTGACTTCAAAAAACAAGAGCTGGGGTGCATCAGAAGAGGAAATGGTGGACCTATCAGAACCTCGGTTGGAATCATTTTGCGTGACAGGCACAGATTTCCCTTGA 1848 0.3983 MKRQLKVSVALVISLLWFQHSLCANEPSDSGLNKWKCRCSFRVDQKNTISNCSKSCDCHSETASIWTCICDSNGFPEVAAGSHNPNCFIACNCIWGTAKMSIGSKKHISSKIVITIIVMCVTCTTIAFLVSVLCYVRRRKRHHPIQSPMISSSDKETSYSSTSNFISQRTSFVPDIKGAISSPISHITRCFQKASILFGNQKETFHGNIIQFSFADLENATENFSASNLIGLGGSSYVYRGRLENGSNVAVKRLKNQGGPEADTEFFTEIELWSRLHHCHLVPLIGYCSELKGKTVQRLLVFDYMSNGNLRDRLDGVFGKNMDWSTRVTIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKNWQAKITDLGLAKDLRSGDLASCSDSSQKMKGTFGYFAPEYAIVGRASIESDVFSFGVVLLELISGRQPILKSAGKEESLVVWATPRLYDSRRVITELADPQLKGNFPEDEVYIMANLAKECLLLDPDTRPTMSEVVLILSSISRTKSRRRRYNQLCLFQVNTFAEEPDDAEKQRQASWRRFPPHNSLPRGTDYNLRVEKEDKDVDTISTEYMKSLILLTSKNKSWGASEEEMVDLSEPRLESFCVTGTDFP 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04304 615 Pfam Protein kinase domain 226 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04304 615 SUPERFAMILY Protein kinase-like (PK-like) 205 503 IPR011009 -
Trre11g04304 615 ProSitePatterns Protein kinases ATP-binding region signature. 230 252 IPR017441 GO:0005524
Trre11g04304 615 Gene3D Phosphorylase Kinase; domain 1 196 304 - -
Trre11g04304 615 SMART serkin_6 224 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04304 615 FunFam receptor-like serine/threonine-protein kinase NCRK 305 515 - -
Trre11g04304 615 PANTHER OS01G0750732 PROTEIN 39 524 - -
Trre11g04304 615 Gene3D Transferase(Phosphotransferase) domain 1 305 526 - -
Trre11g04304 615 CDD STKc_IRAK 230 506 - -
Trre11g04304 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 349 361 IPR008271 GO:0004672|GO:0006468
Trre11g04304 615 MobiDBLite consensus disorder prediction 532 556 - -
Trre11g04304 615 FunFam receptor-like serine/threonine-protein kinase NCRK 198 304 - -
Trre11g04304 615 ProSiteProfiles Protein kinase domain profile. 224 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04304 Trre-Chr11 55583169 55587292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04304 1 609 Receptor kinase-like Gene Family AT2G28250 48.293 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Trre11g04304 Pkinase 1.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04304 - - gmx:100499641 865.914