Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04302 ATGGGATTTGATAATCCAAGATCTGAGAGGTTTGAAGATGATTCTGAGACATCAAAAATTCCTACAACAAATGGAGTTAAGGTTAAATACCACATTGATGGAACACAAATACCTAAACCAAGTTCTAAAAAGGCTCAAAAGAATGCTACAAGGAACAAGTTTTTGAAAACAAGAGTATTATCAAGAGTATTCTCAGAAGATTATGAAAGAGTAAAAAAAAGAGTATTAGTATTAGATCCTAGGGGACAAATCATACAACGTTGGAACAAGATATTTTTAGTAGCATGTTTAGTTTCTTTGTTTGTGGATCCACTGTTCTTTTATTTACCAGTGGTTAGAGATGAAGTTTGCATTGATATTGGAAAAAAACTTGAAGTTGTTCTCACAATTGTTAGATCAGTTGGAGATTTGTTTTACATGATTCAGATTTTTACGAAGTTTCGTACCGCTTATGTTGCTCCTTCTTCCAAGGTTTTTGGTAGAGGAGAACTTGTTCTTACTTATTCTAAGATTGCTGTTAGATACTTCAGCAAAGGTTTTTGGTTAGACTTTATTGCTGCATTGCCTCTTCCTCAGGTTTTGATTTGGATTATTATACCAACACTTAGGGGTTCAACCATGAGAAATACCAAAAATGTCCTTAGATTTTTCATCATATTCCAATATATTCCAAGGCTATATTTGATTTTTCCACTTTCATCACAAATTGTAAAAGCTACAGGAGTTGTGACAGAAACAGCATGGGCAGGTGCTGCTTACAACCTCATGCTTTACATGTTAGCCAGCCATATTTTAGGAGCTTGCTGGTACCTTCTATCAATCGAACGTCAAGAAGCGTGTTGGAAAAGTGTGTGCAATATGGAGAAATCAAATTGTCAATATGGATTCTTTGATTGCCACAGAGCTAAAGATGCTCTCAGGATTAAATGGTTTATAGCTAGTAATGTCACAAATTTATGTTCGCCAAATGCTGGTTTTTATCAGTTTGGTATATATGCTGACGCCGTAACTTCTCAAGTTACATCCTCACCATTCTTCAATAAGTACTTCTTTTGCCTCTGGTGGGGCTTAAGGAATCTCAGTTCTTTGGGACAAGGCCTTCTTACTAGCACTTTTATTGGAGAAATAATGGTTGCCATTGTTGTGGCAACCCTTGGATTGGTTCTTTTTGCATTGTTGATTGGTAATATGCAGACATACCTTCAATCGATAACTGTTCGCCTAGAAGAGTGGAGAGTGAAAAGAACTGATACAGAACAATGGATGCATCATAGGCAATTACCTTCAGAACTAAGAGAGTCTATTCGTAAATATAACCAATATAAATGGGTGGCTACACGAGGAGTTGAAGAAGAAGATCTTCTCAAAGGACTTCCATTGGATCTTAGGAGAGACATCAAACGCCATCTTTGTCTTGAACTAGTTCGAGGAGTTCCATTGTTTGATCAAATGGATGAGAGGATGCTAGACGCAATATGTGAAAGACTAAAGCCTGCATTATGCACCGAAGGCACTTACCTTGTTCGTGAAGGCGATCCAGTAAATGAAATGCTCTTCATAATTAGAGGCCATCTTGATTCTTACACCACAAATGGTGGCCGAGCCGGATTCTTCAACTCGTGTCGTATTGGTCCAGGCGATTTCTGTGGCGAAGAACTATTAACATGGGCATTGGATCCAAGACCAAGTGTGATACTCCCTTCTTCAACAAGAACAGTTAAAGCTATCTCAGAAGTAGAAGCATTTGCACTCATAGCCGAAGATCTGAAGTTTGTTGCATCTCAATTTAGAAGATTACATAGTAAACAACTTAGGCATAAATTCAGATTTTATTCACACCAATGGAGAACTTGGGCTGCTTGTTTTATTCAAGCTGCATGGAGAAGGCACAAGAAAAGGAAAGAAGCTGCTGAATTAAGGGCTAAGGAGAACCTTGTGGTAGCTTCTGAGGCTGAAATAGCAACAAAATATGGAACAAATTTTGTTGTTTATGGAAAAAAAGTTGCAAGGAGTACTAGGAAAGGTGTTAATGTGCATTCCGGGACAAATTCTGGAGTAGTTAGGTCTTTGCAGAAGCCAACAGAACCTGATTTTTCTGATGAATAA 2106 0.377 MGFDNPRSERFEDDSETSKIPTTNGVKVKYHIDGTQIPKPSSKKAQKNATRNKFLKTRVLSRVFSEDYERVKKRVLVLDPRGQIIQRWNKIFLVACLVSLFVDPLFFYLPVVRDEVCIDIGKKLEVVLTIVRSVGDLFYMIQIFTKFRTAYVAPSSKVFGRGELVLTYSKIAVRYFSKGFWLDFIAALPLPQVLIWIIIPTLRGSTMRNTKNVLRFFIIFQYIPRLYLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHILGACWYLLSIERQEACWKSVCNMEKSNCQYGFFDCHRAKDALRIKWFIASNVTNLCSPNAGFYQFGIYADAVTSQVTSSPFFNKYFFCLWWGLRNLSSLGQGLLTSTFIGEIMVAIVVATLGLVLFALLIGNMQTYLQSITVRLEEWRVKRTDTEQWMHHRQLPSELRESIRKYNQYKWVATRGVEEEDLLKGLPLDLRRDIKRHLCLELVRGVPLFDQMDERMLDAICERLKPALCTEGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRAGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRHKKRKEAAELRAKENLVVASEAEIATKYGTNFVVYGKKVARSTRKGVNVHSGTNSGVVRSLQKPTEPDFSDE 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04302 701 CDD CAP_ED 480 611 IPR000595 -
Trre11g04302 701 FunFam Cyclic nucleotide-gated ion channel 1 478 596 - -
Trre11g04302 701 MobiDBLite consensus disorder prediction 1 17 - -
Trre11g04302 701 MobiDBLite consensus disorder prediction 675 690 - -
Trre11g04302 701 Gene3D Helix hairpin bin 408 471 - -
Trre11g04302 701 Gene3D - 92 406 - -
Trre11g04302 701 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 48 698 - -
Trre11g04302 701 MobiDBLite consensus disorder prediction 1 24 - -
Trre11g04302 701 Gene3D Jelly Rolls 478 598 IPR014710 -
Trre11g04302 701 ProSiteProfiles cAMP/cGMP binding motif profile. 480 577 IPR000595 -
Trre11g04302 701 SMART cnmp_10 480 611 IPR000595 -
Trre11g04302 701 MobiDBLite consensus disorder prediction 675 701 - -
Trre11g04302 701 SUPERFAMILY Voltage-gated potassium channels 79 402 - -
Trre11g04302 701 ProSiteProfiles IQ motif profile. 616 644 IPR000048 GO:0005515
Trre11g04302 701 FunFam Cyclic nucleotide-gated ion channel 1 407 471 - -
Trre11g04302 701 Pfam Ion transport protein 87 407 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre11g04302 701 SUPERFAMILY cAMP-binding domain-like 410 606 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04302 Trre-Chr11 55573933 55577083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04302 50 701 Ion Channels AT2G28260 74.693 0.0 1014
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04302 K05391 - gmx:100786868 1148.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04302 11 55573933 55577083 Trre11g04302 11 55573933 55577083 ECH
Trre11g04302 11 55573933 55577083 Trre7g01592 7 12085289 12088385 PCT