Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04299 ATGGCAACAGCAACATACCCACCACCCCCACCTTTTTACAGGCTTTACAAAGATTACGCGCAAGACCCTCAGTCTGCTCCAGAGCCTCCACCACCAATTGAGGGAACTTATATTTGTTTTGGAGGCAGTTACACCACTAGTGATGTTCTACCAAGCTTGGAGGAACAAGGGGTGCGCCAACTCTATTCTAAAGGACCTAATATTGATTTCAAGAAGGAGCTGAGATCACTTAATGGAGAACTGCAACTACACATATTGGAGCTTGCTGATATTCTTATTGAGAGACCATCACAATATGCAAGGAGAGTCGAAGAAATTTCAACCGTGTTCAAAAATTTACATCACCTTTTAAATTCACTGCGCCCTCATCAGGCGAGAGCAACTTTGATTCACATTTTGGAACTTCAGATAGAGCGCCGTAAGCAAGCTGTGGAGGACATAAAAAGGAGGAGAGAAGAAGCCCGAAGACTCCTTAATGAGTCACTGGCAACACTTGGTGGCCAGTAA 507 0.4438 MATATYPPPPPFYRLYKDYAQDPQSAPEPPPPIEGTYICFGGSYTTSDVLPSLEEQGVRQLYSKGPNIDFKKELRSLNGELQLHILELADILIERPSQYARRVEEISTVFKNLHHLLNSLRPHQARATLIHILELQIERRKQAVEDIKRRREEARRLLNESLATLGGQ 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04299 168 Coils Coil 130 164 - -
Trre11g04299 168 Pfam MED7 protein 4 158 IPR009244 GO:0003712|GO:0006357|GO:0016592
Trre11g04299 168 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7 2 166 IPR009244 GO:0003712|GO:0006357|GO:0016592
Trre11g04299 168 SUPERFAMILY Mediator hinge subcomplex-like 67 159 IPR037212 GO:0016592
Trre11g04299 168 Gene3D - 60 159 IPR044888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04299 Trre-Chr11 55540148 55542785 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED7 Trre11g04299 Med7 2.9e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04299 K15148 - gmx:100792250 291.967