Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04296 ATGCCTGAGGATATTCCTAACATGAAGGACTCTTGGTTTTTTGACAAGAATTTTAACGGTTTGTCGGACGAGGTTTTCGATGATGTTCTCCAGTTTTTTGATTTTCCATTGGAAGATGTGGAAGCTAATCCTGCTGAAGAAGATTGGAGTGCTCTCGGAGAGCCGTGTTTTGATGCGTTTTCAGTGGCACCGGAAGGATTGTATGCCAAACCCAAAATTGAGAATCCTCAACTTGGGAATGGCTTCTCCGCTCCTGTGAGTGTAATCTCGTGCAATGAGATCTCCCCGATGATACAAGTGCCGAGGACTGTTGCACCAATTTATGGAAAAACTCTACCCAACCAGAATGCACCTTTCTATGAAAAAAAAGTTGTGCTTCAATACAGCCCGGTTTCTGTTTTCGAAGGCAGTAGTGCTTCCTCAGGTGAGAATTCCAGCTTTGATCTGCCTGTGATCCCAGTAAAGCGTGCTCGAAGTAAACGCCGGCGTCCTTCAAGCTCAAATCCTGTATTCTCGGTTTCTTTCATTGCTAATTCAACGGCATTTCAAAAATATCCTAAGACACCTGCCTCGGAGTCGGATTTAAACAGAGTAAAGAAACAGAGAAAAAGGGACCTCTCTATGCTCTCAGGTGATGCTGAGACAAACAGATCCTCATCACAAGAATCAGCTATCGTTCGAAAATGCACACACTGCGAGGTCACAAAGACTCCGCAATGGAGAGAGGGACCTAAAGGCCCCAAAACACTGTGCAATGCTTGTGGTGTTCGGTACAGGTCCGGACGCCTCTATCCTGAATACCGTCCTGCAAATAGCCCTACTTATGTAGAATCAGTGCACTCAAACTGTCACAAGAAGGTTCTGGAGATGCGAGGCGTAGTCGTCAAAGAAGGTGTTAGGGGACGTTCATCAAATCTTTCCGGAAATTCCGTAGGAAATTCCGTTGGACAACGTTCTCATGGATCTTATTGA 972 0.4537 MPEDIPNMKDSWFFDKNFNGLSDEVFDDVLQFFDFPLEDVEANPAEEDWSALGEPCFDAFSVAPEGLYAKPKIENPQLGNGFSAPVSVISCNEISPMIQVPRTVAPIYGKTLPNQNAPFYEKKVVLQYSPVSVFEGSSASSGENSSFDLPVIPVKRARSKRRRPSSSNPVFSVSFIANSTAFQKYPKTPASESDLNRVKKQRKRDLSMLSGDAETNRSSSQESAIVRKCTHCEVTKTPQWREGPKGPKTLCNACGVRYRSGRLYPEYRPANSPTYVESVHSNCHKKVLEMRGVVVKEGVRGRSSNLSGNSVGNSVGQRSHGSY 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04296 323 MobiDBLite consensus disorder prediction 186 222 - -
Trre11g04296 323 ProSitePatterns GATA-type zinc finger domain. 229 254 IPR000679 GO:0006355|GO:0043565
Trre11g04296 323 ProSiteProfiles GATA-type zinc finger domain profile. 227 259 IPR000679 GO:0006355|GO:0043565
Trre11g04296 323 Gene3D - 224 274 IPR013088 GO:0006355|GO:0008270
Trre11g04296 323 FunFam GATA transcription factor 218 305 - -
Trre11g04296 323 MobiDBLite consensus disorder prediction 193 210 - -
Trre11g04296 323 Pfam GATA zinc finger 229 262 IPR000679 GO:0006355|GO:0043565
Trre11g04296 323 CDD ZnF_GATA 228 275 IPR000679 GO:0006355|GO:0043565
Trre11g04296 323 PANTHER GATA TRANSCRIPTION FACTOR 134 291 - -
Trre11g04296 323 MobiDBLite consensus disorder prediction 300 323 - -
Trre11g04296 323 SMART GATA_3 223 273 IPR000679 GO:0006355|GO:0043565
Trre11g04296 323 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 223 283 - -
Trre11g04296 323 MobiDBLite consensus disorder prediction 302 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04296 Trre-Chr11 55494121 55498246 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04296 15 291 C2C2-Gata Transcription Factor Family AT1G08010 40.000 4.09e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre11g04296 GATA 1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04296 - - psat:127087059 395.586