Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04289 ATGTGCATCACAGCAACCGCAATCGCAACAACCGCAAAGCGTGCTCGAAGTAAACGCCGGCGTCCTTCAAGCTCAAATCATGTATTCTCGGTTTCTTTCATTGCTAATTCAACGGCATTTCAAAACTATCCTAAGACATCTGCCTCGGAGTCGGATTTAAACAGAGTAAAGAAACAGAGAAAAAGAGACCTCTCTATGCTCTCAGGTGATGCTGAGACAAAGAGATCCTCCTCACAAGAATCAGCTATCATTCGAAAATGCACACACTGCGAGGTCACAAAGACTCCGCAATGGAGAGAGGGACCTAAAGGCCCCAAAACACTGTGCAATGCTTGTGGTGTACGGTACAGGTCCGGACGCCTCTATCCTAAATACCGTCCTGCAAATAGCCCTACTTATGTAGAATCAGTGCACTCAAACTGTCACAAGAAGGTTCTGGAGATGCGAGGCGTAGTCGTCAAAGAAGGTGTTAGGGGACGTTCATCAAATCTTTCCGGAAATTCCGTAGGAAATTCCGTCAGACAACGTTCTCATGGATCTTATTGA 546 0.4615 MCITATAIATTAKRARSKRRRPSSSNHVFSVSFIANSTAFQNYPKTSASESDLNRVKKQRKRDLSMLSGDAETKRSSSQESAIIRKCTHCEVTKTPQWREGPKGPKTLCNACGVRYRSGRLYPKYRPANSPTYVESVHSNCHKKVLEMRGVVVKEGVRGRSSNLSGNSVGNSVRQRSHGSY 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04289 181 CDD ZnF_GATA 86 133 IPR000679 GO:0006355|GO:0043565
Trre11g04289 181 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 80 141 - -
Trre11g04289 181 Pfam GATA zinc finger 87 120 IPR000679 GO:0006355|GO:0043565
Trre11g04289 181 SMART GATA_3 81 131 IPR000679 GO:0006355|GO:0043565
Trre11g04289 181 Gene3D - 83 132 IPR013088 GO:0006355|GO:0008270
Trre11g04289 181 ProSiteProfiles GATA-type zinc finger domain profile. 85 117 IPR000679 GO:0006355|GO:0043565
Trre11g04289 181 FunFam GATA transcription factor 81 131 - -
Trre11g04289 181 MobiDBLite consensus disorder prediction 160 181 - -
Trre11g04289 181 MobiDBLite consensus disorder prediction 157 181 - -
Trre11g04289 181 ProSitePatterns GATA-type zinc finger domain. 87 112 IPR000679 GO:0006355|GO:0043565
Trre11g04289 181 MobiDBLite consensus disorder prediction 51 69 - -
Trre11g04289 181 PANTHER GATA TRANSCRIPTION FACTOR 8 149 - -
Trre11g04289 181 MobiDBLite consensus disorder prediction 44 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04289 Trre-Chr11 55465920 55466465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04289 8 149 C2C2-Gata Transcription Factor Family AT1G08010 48.611 1.00e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre11g04289 GATA 4.3e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04289 - - psat:127087059 207.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04289 11 55465920 55466465 Trre11g04289 11 55465920 55466465 ECH
Trre11g04289 11 55465920 55466465 Trre7g01601 7 12184311 12186622 PCT