Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04284 ATGAAGGAAGGTGACAAAAGCTTAGATCCACAACTATGGCACGCATGTGCTGGTGGAATGGTTCAAATGCCATCAGTGAACACAAAAGTGTTCTACTTTCCACAAGGGCATGCAGAACACGCACAATCAAACGTTGATTTTGGTGATTCTTTCAGAATTCCACCCCTTATACTCTGTCGTGTTGGTTCTGTGAAATTCTTAGCTGACCCAGAAACAGATGAAGTTTTTTCAAAGATAACTTTGATTCCTTTAAGAAATTCAGAGCTTGAAAATGAAGATTCTGATGGTTTTGATGGTAATGTTTCTGAGAATTCAGAAAAGCCTTCATCTTTTGCTAAAACTTTAACTCAATCTGATGCAAACAATGGTGGAGGCTTTTCTGTTCCTAGATACTGTGCAGAAACAATTTTTCCACGGCTTGATTACTCGGCTGAACCACCGGTTCAGACGGTGATCGCGAAAGATGTTCACGGTGAGGTTTGGAAGTTTAGACATATCTATAGAGGTACACCAAGGAGACACTTGTTAACAACTGGTTGGAGTAGTTTTGTGAACCAGAAAAAACTTGTTGCAGGTGATTCTATTGTGTTTCTGAGAGGTCAAAATGGTCAACTTTATGTTGGGATTCGTCGTGCGAAGAGAGGGATAGTTAATGGTTTGGAAACACCTTCTGGATGGAGTTCTGGGAATGGAAGTTGTGGACTTGGTGTTGGAGGTTTTGGTGGTGCTTTTTCTGTTTTTTTGAGAGAGGAAAATAATAAGATGTTGAGAAATGGGATTGGTGATGGGGGTGTTGGTGGTAATTTAGGGGGTGGAAGAGTGAAAGTGAGTGGTGAATCAGTGAAAGAAGCTATGAGACTTGCTGCTAGTAATCAAACATTTGAGGTTGTTTATTATCCAAGAGCAAGTACTCCTGAGTTTTGTGTTAAGGTTTCTGCTGTTAAGGCTGCTATGAGGATTCAATGGTGTTCTGGTATGAGGTTTAAGATGCCATTTGAAACTGAGGATTCTTCAAGAATTAGTTGGTTCATGGGAACTATTTCTTCCGTTCATGTCGTCGATCCTATTCGTTGGCCTAATTCCCCTTGGAGACTTCTTCAGGTAACTTGGGATGAACCGGATTTGCTACACAATGTGAAGCGAGTAAGCCCGTGGTTGGTCGAGTTAGTATCGAACATGTCAGTAATTCATCTCTCACCATTCTCACCACCGAGAAAGAAACTCCGTTTTCCACAACATCCTGATTTCCCTCTCGATGTTGTTCAGTTTCCAATACCGACATTTTCGGGCAACCCTCTAAACCCTTTGTGTTGTGTATCATCTTCGGATCATTATAACGCTCCTGCCGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTATCAGATCTTCACCTTAACAACAACAATAATAAAGTTCAGTTAGGTGTGTTTCCAAAGAATCTTGAGACGACGATTTCTAATGATAAGGGCAAAGAAAGTTTATCATGTTTGTTGACTATAGGAAATTCTCATAAGAGAAGTTTGGAGATAAAATCTGATAATAATGTTAAGAGACACCAATTTTTGCTTTTTGGACAACCAATTCTCACTGAACAACAAATCTCTCGAAAAGTTTCTAGCGATGATGTTTTGTTGTCTCAGAATAAGGACAAAGAGAAATGGTTTTTCGGCGATACTACTACTACTACTACTCAATCTTCAATTTCTGAACAATTTTCACCAGCAAAATCTTCTACTACTAGTGCTAGTGCCGAGTTTTGTTGGCAACTCGGATTAGATACTGGTCATTGCAAGGTTTTCTTGGAGTCAGAAGATGTTGGAAGAACCTTAGACTTGTCATGTGTTGGTTCTTATGAAGAACTATATAGAAAACTTGCTAAAATGTTTGGAATTGAAAGATCTGAGATGTCGAGTCGTGTACTCTACCGTGACGCAACTGGTGCTGCTAAACAAACCGGTGAAGAACCCTTCAGTGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGATGGATTCAGCTAGCAAAGATACTAGAAGGGTATGTATCACAGGAACTAGGAATGCTGAACGTGGATTAGATGCATCAAATAAGACAGGACCTATGAGTATATTTGCTTAA 2133 0.3994 MKEGDKSLDPQLWHACAGGMVQMPSVNTKVFYFPQGHAEHAQSNVDFGDSFRIPPLILCRVGSVKFLADPETDEVFSKITLIPLRNSELENEDSDGFDGNVSENSEKPSSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRGQNGQLYVGIRRAKRGIVNGLETPSGWSSGNGSCGLGVGGFGGAFSVFLREENNKMLRNGIGDGGVGGNLGGGRVKVSGESVKEAMRLAASNQTFEVVYYPRASTPEFCVKVSAVKAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVHVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNMSVIHLSPFSPPRKKLRFPQHPDFPLDVVQFPIPTFSGNPLNPLCCVSSSDHYNAPAAGIQGARHAQIGISLSDLHLNNNNNKVQLGVFPKNLETTISNDKGKESLSCLLTIGNSHKRSLEIKSDNNVKRHQFLLFGQPILTEQQISRKVSSDDVLLSQNKDKEKWFFGDTTTTTTQSSISEQFSPAKSSTTSASAEFCWQLGLDTGHCKVFLESEDVGRTLDLSCVGSYEELYRKLAKMFGIERSEMSSRVLYRDATGAAKQTGEEPFSDFMKTAKRLTILMDSASKDTRRVCITGTRNAERGLDASNKTGPMSIFA 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04284 710 Gene3D - 109 213 IPR015300 -
Trre11g04284 710 FunFam Auxin response factor 109 213 - -
Trre11g04284 710 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Trre11g04284 710 Gene3D - 597 682 - -
Trre11g04284 710 ProSiteProfiles PB1 domain profile. 598 678 IPR000270 GO:0005515
Trre11g04284 710 FunFam Auxin response factor 322 395 - -
Trre11g04284 710 MobiDBLite consensus disorder prediction 90 118 - -
Trre11g04284 710 Pfam Auxin response factor 284 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre11g04284 710 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 677 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre11g04284 710 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Trre11g04284 710 SMART B3_2 111 213 IPR003340 GO:0003677
Trre11g04284 710 Gene3D - 321 396 - -
Trre11g04284 710 SUPERFAMILY DNA-binding pseudobarrel domain 106 212 IPR015300 -
Trre11g04284 710 CDD B3_DNA 110 211 IPR003340 GO:0003677
Trre11g04284 710 MobiDBLite consensus disorder prediction 101 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04284 Trre-Chr11 55421544 55424705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04284 1 680 B3 DNA Binding Superfamily AT4G30080 58.106 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre11g04284 B3 3.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04284 - - gmx:100778135 975.696