Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04282 ATGGCAAGTATGTTAGGGCTTGACCAGGGCACCATAAGAAGTGGAGCTTCATCGGCAAGGATTGCAGTTTATAAAGTATGCTGGAGTGATGATGGATGCAATGATGAGGACATCCTCGATGCAGTTAATGATGCTGTTGCTGACGGAGTTGATATTATATCAGTTTCACTTGGTGGAGACATAAAAGGATATGAATATTATAAAGATGGATTATCAATTGGAGCATTCCATGCAATGGAACACAGCGTACTAACCGTATTTGCTGCTGGAAACCACGGTCCAAATCGTGGATCCATAACGAATACTTCACCCTGGGCAATGTATGTGGCTGCAAGCACCATAGACAGAAAACTTATCACCAAAGTCAAACTAGGAAATAACAGAATCTATGAGGTAAATCCATATTTAATAAAGTCATTTTGA 423 0.4019 MASMLGLDQGTIRSGASSARIAVYKVCWSDDGCNDEDILDAVNDAVADGVDIISVSLGGDIKGYEYYKDGLSIGAFHAMEHSVLTVFAAGNHGPNRGSITNTSPWAMYVAASTIDRKLITKVKLGNNRIYEVNPYLIKSF 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04282 140 ProSiteProfiles Serine proteases, subtilase domain profile. 1 140 - -
Trre11g04282 140 Gene3D Peptidase S8/S53 domain 2 114 IPR036852 GO:0004252|GO:0006508
Trre11g04282 140 Gene3D - 115 131 - -
Trre11g04282 140 Pfam Subtilase family 13 115 IPR000209 GO:0006508|GO:0008236
Trre11g04282 140 SUPERFAMILY Subtilisin-like 2 130 IPR036852 GO:0004252|GO:0006508
Trre11g04282 140 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 2 128 IPR045051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04282 Trre-Chr11 55397597 55398019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04282 2 126 Subtilisin-like Serine Gene Family AT5G03620 52.800 9.12e-40 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04282 - - lja:Lj4g3v2294450.1 179.489