Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04278 ATGGCTATGGCTGTTGCACAACAACAAAGGGATAACAGCATTGAGAGACACATTGATTCTTCTGGGAAATATGTGAGGTACACTGCTGAACAAATTGAAGCTTTGGAAAAGGTTTATGTGGAATGCCCCAAACCAAGTTCCATGAGAAGGCAACAACTGATTCAAGAGAATCCGGTTTTGTCCAACATTGAACCTAAGCAAATTAAGGTTTGGTTCCAGAATAGAAGGTGTAGGGAGAAGCAGAGAAAAGAGGCTTCTAACCTTCAGACTGTTAACAGGAAACTTGCTGCAATGAACAAGCTGTTGACGGAGGAAAATGACCGGCTGCAGAAACAGGTTTCGCTGCTGGTGAATGAGAATGGATTTATGCGCCAGCAAGTGAACACTATCACAGCTGCTGCAAGTGCTGATGGTAGTGGCATTGATTCTGCGGCTGCTACTACTCCTCCGAGTTCCATGAGAGATGCTAATAGCCCTGCTGGATTCCTATCAATTGCTGAGGAAACATTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGAATGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATATTTGCCATTTCTCAAGGTTGCAATGGAGTGGCAGCTCGAGCCTGCGGTCTTGTTAGTTTAGAACCTGCTAAGATTGTTGAGCTCCTAAAAGATCGTGCATCTTGGTATCGTGACTGTCGGAGTTCAGAAGTTTTTACAATGTTCCCAGCTGGAAATGGAGGGACAATTGAACTTGTTTACACACAGACATATGCTCCAATGACGCTGGCTTCTGCTCGGGATTTCTGGACTCTAAGATACACCACAAACTTGGATAATGGCAGTATTGTGGTTTGTGAAAGGTCGCTGTCTGGTTCTGGTGCTGGGCCTAATGCTGCCGCTGCCTCACAATTTGCGAGGGCTGAAATGCTTCCCAGTGGCTATTTGATTCGACCATGTGAAGGTGGAGGGTCAATCATCCGCATCGTAGACCACCTTAACCTTCAGCCATGGAGTGTGCCAGAAGTGCTGCGACCACTCTACGAATCATCAACGATGGTTGCTCAGAGATTGACAATTGCAGCACTTCGCTATATCAGGCAAGTAGCTCAAGAAACAAGTGGCGAAGTGGTATATAGCATGGGTCGGCAACCTGCGGTTCTGAGAACTTTTAGTCAACGGATGAGCAGAGGTTTCAATGATGCTATCAATGGATTCAATGATGATGGTTGGTCTGTTCTGAACTGTGATGATGCGGAGGGTGTTACTATTTCAGTTAATTCAATCAAGAATTTGAGTGGCACTTCTAATCCAGCAAGTTCCCTTTCACTCCTCGGAGGAATTGTCTGTGCAAAAGCTTCTATGTTACTCCAAAACATCACTCCTGCTGTTTTAGTACGCTTTCTGAGGGAACATCGCTCAGAGTGGGCTGATTTTAGTGTTGACGCATTTTCTGCTGCGTCGCTTAAAGCTGGCTCATATGGCTATTCTGGAATGAGGTCTACAAGATTCACTGGCAACCAAGCAATCATGCTGCTTGGACATTCAATTGAACATGAAGAGATGCTAGAAGTTATCCGCCTTGAAGGTCACTCTCCTACTCAAGAAGATTCTTTTGTTTCTAGGGACGTTCATCTCTTACAGCTGTGTACTGGAATCGATGAAAATGCTGTGGGCGCCTGTTCTGAGCTCATATTTGCTCCAATTGATGACATGTTTCCCGAAGATGCTCCATTGGTGCCTTCTGGTTTCCGCATTGCCTTGTTGAATTCGCAACAGGGTGATAAGCAGAACTCAATGGCAGCAAATCGAACCTTGGATTTGACATCTGGTCTTGAAGTAGCCCCAACACCAACTCATGCCACGGGAGACACATGTCCTAACAATAGATGTGTTTTGACTGTTGCCTTCCAGTTTCCTTTTGAGACCGGTCTGCAGGATAATGTTGCAGCTATGGCACGTCAGTATATCCGCCGTGTAGTTTCCGCTGTGCAGGCACTTGCCACTGCTATATCTCCATCTCCATCCAGTGCTAACACTGCCGGTGAAGCAAAACTCTCCCCTGGCTCTCCTGAAGCCCTCACACTAGCTCAATGGATCTGCCAGAGTTACAGTAGTTATTTGGGGGCGCAACTGCTGAGATCTGATTCTCTTATCGGGGATATGGTACTGAAACATTTGTGGCTTCATCCTGATGCTATTTTGTGCTGCTCTATGAAGACGGTGCCTGTCTTCATCTTCGCAAACCAGGCTGGCCTCGACATGCTGGAAACAACTCTAGTGGCTCTACAAGACATCACGCTGGATAAAATATTCAATGACTCTGCACGCAAGAATTTGGTTGCATACTTCTCTAAGTTAATGCAGGAGGGATTTGCTTGTATGCCAGCTGGGATCTGCATGTCAACAATGGGGAGGCACGCATCATATGATCAAGCTGTCGCGTGGAAAGTGCATGCTGAAGATACCAGTGTGCACTGTCTCGCCTTTTCTTTCATAAATTGGTCATTTATATGA 2532 0.4629 MAMAVAQQQRDNSIERHIDSSGKYVRYTAEQIEALEKVYVECPKPSSMRRQQLIQENPVLSNIEPKQIKVWFQNRRCREKQRKEASNLQTVNRKLAAMNKLLTEENDRLQKQVSLLVNENGFMRQQVNTITAAASADGSGIDSAAATTPPSSMRDANSPAGFLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSVGIFAISQGCNGVAARACGLVSLEPAKIVELLKDRASWYRDCRSSEVFTMFPAGNGGTIELVYTQTYAPMTLASARDFWTLRYTTNLDNGSIVVCERSLSGSGAGPNAAAASQFARAEMLPSGYLIRPCEGGGSIIRIVDHLNLQPWSVPEVLRPLYESSTMVAQRLTIAALRYIRQVAQETSGEVVYSMGRQPAVLRTFSQRMSRGFNDAINGFNDDGWSVLNCDDAEGVTISVNSIKNLSGTSNPASSLSLLGGIVCAKASMLLQNITPAVLVRFLREHRSEWADFSVDAFSAASLKAGSYGYSGMRSTRFTGNQAIMLLGHSIEHEEMLEVIRLEGHSPTQEDSFVSRDVHLLQLCTGIDENAVGACSELIFAPIDDMFPEDAPLVPSGFRIALLNSQQGDKQNSMAANRTLDLTSGLEVAPTPTHATGDTCPNNRCVLTVAFQFPFETGLQDNVAAMARQYIRRVVSAVQALATAISPSPSSANTAGEAKLSPGSPEALTLAQWICQSYSSYLGAQLLRSDSLIGDMVLKHLWLHPDAILCCSMKTVPVFIFANQAGLDMLETTLVALQDITLDKIFNDSARKNLVAYFSKLMQEGFACMPAGICMSTMGRHASYDQAVAWKVHAEDTSVHCLAFSFINWSFI 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04278 843 SMART HOX_1 20 86 IPR001356 GO:0003677
Trre11g04278 843 CDD homeodomain 23 83 IPR001356 GO:0003677
Trre11g04278 843 Gene3D - 17 89 - -
Trre11g04278 843 CDD bZIP 75 114 - -
Trre11g04278 843 SMART START_1 164 374 IPR002913 GO:0008289
Trre11g04278 843 Pfam MEKHLA domain 700 842 IPR013978 -
Trre11g04278 843 SUPERFAMILY Homeodomain-like 19 85 IPR009057 -
Trre11g04278 843 Pfam START domain 165 371 IPR002913 GO:0008289
Trre11g04278 843 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 20 843 IPR044830 GO:0003700
Trre11g04278 843 Coils Coil 88 119 - -
Trre11g04278 843 Gene3D - 199 381 IPR023393 -
Trre11g04278 843 ProSiteProfiles 'Homeobox' domain profile. 18 82 IPR001356 GO:0003677
Trre11g04278 843 ProSiteProfiles START domain profile. 155 383 IPR002913 GO:0008289
Trre11g04278 843 Pfam Homeodomain 23 81 IPR001356 GO:0003677
Trre11g04278 843 SUPERFAMILY Bet v1-like 164 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04278 Trre-Chr11 55373511 55377852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04278 1 843 Homeobox Transcription Factor Family AT5G60690 73.090 0.0 1295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre11g04278 START 3.2e-44 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04278 K09338 - qsu:112038274 1291.56