Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04274 ATGCCGCCAAAGCTTGACCCGTCACAGGTGGTTGAAGTATACGTCAGAGTCACCGGCGGCGAGGTAGGTGCAGCGAGTTCACTCGCTCCCAAAATCGGTCCACTCGGTCTCTCTCCTAAAAAGATCGGAGAAGACATTGCTAAAGAAACAGCCAAAGACTGGAAGGGTTTAAGGGTTACAGTGAAACTCACTGTCCAAAATCGTCAGGCGAAGGTTTCGGTTGTTCCATCGGCGGCAGCGCTTGTTATCAAGGCTTTGAAAGAGCCTGAACGTGATCGGAAGAAGGTTAAGAATATCAAACACAATGGGAATATTTCACTTGATGATGTTATTGAAATTGCTAAGGTTATGAAACCTAGATCAATGGCGAAGGAACTTTCTGGAACTGTTAAGGAGATTCTTGGAACTTGTGTTTCTGTTGGTTGTACTGTTGATGGTAAAGATCCTAAGGATTTGCAACAGGAGATTGATGATGGAGATGTTGAAATTCCATAG 495 0.4465 MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHNGNISLDDVIEIAKVMKPRSMAKELSGTVKEILGTCVSVGCTVDGKDPKDLQQEIDDGDVEIP 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04274 164 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Trre11g04274 164 FunFam 60S ribosomal protein L12 1 81 - -
Trre11g04274 164 Gene3D - 1 81 IPR036796 -
Trre11g04274 164 FunFam 60S ribosomal protein L12 82 164 - -
Trre11g04274 164 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
Trre11g04274 164 MobiDBLite consensus disorder prediction 145 164 - -
Trre11g04274 164 PANTHER 60S RIBOSOMAL PROTEIN L12 1 151 IPR000911 GO:0003735|GO:0005840|GO:0006412
Trre11g04274 164 Gene3D - 82 164 IPR036769 -
Trre11g04274 164 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Trre11g04274 164 Pfam Ribosomal protein L11, N-terminal domain 13 69 IPR020784 -
Trre11g04274 164 ProSitePatterns Ribosomal protein L11 signature. 131 146 IPR020785 GO:0003735|GO:0005840|GO:0006412
Trre11g04274 164 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
Trre11g04274 164 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 149 IPR036769 -
Trre11g04274 164 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04274 Trre-Chr11 55329595 55330089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04274 1 164 Cytoplasmic Ribosomal Protein Gene Family AT5G60670 91.463 7.02e-109 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04274 K02870 - qsu:112036539 315.079