Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04273 ATGGGAAAAGATGTTGAGGTTCAAGAACAAGGTGCTGAATTTTCAGCTAAGGATTATCAAGATCCACCACCAGCACCTTTATTTGATTTAGGTGAATTAACAAAGTGGTCTTTGTATAGAGCTGTGATAGCTGAATTTGTAGCAACACTTCTCTTTCTTTATATCACTGTTTTAACCATTATTGGTTATAGTAGACAAAGTGATACTACTATTGAAGGTAATACTGAATGTGATGGTGTTGGTGTTTTGGGTATTGCTTGGGCTTTTGGTGGTATGATCTTTATTCTTGTTTACTGCACCGCCGGTATCTCAGGAGGACACATAAATCCTGCTGTGACCTTTGGGCTATTTGTGGGACGCAAGGTGTCTTTAATAAGGGCATTACTATACATAATTGCACAATGTTTAGGTGCAATTTGTGGTGCTGGACTTGCAAAGGGTTTCCAAACATCATACTACAACAGGTACAAAGGAGGTGTTAATATGGTTTCTGATGGTTATAGCAAAGGTACTGCTTTAGGTGCTGAGATTATTGGTACCTTTGTTTTGGTCTACACTGTTTTCTCTGCCACTGATCCTAAGAGAAGTGCTAGGGATTCTCATGTTCCTGTTTTGGCACCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTAGCAACAATCCCCGTTACTGGCACCGGCATTAACCCTGCTAGGAGTTTCGGACCAGCTGTTATCTTCAACAACGACAAAGCCTGGGATGATCAGTGGATTTATTGGGTTGGACCATTTATTGGTGCTGCAGTTGCTGCAATCTATCACCAATACATTCTTAGAGGTTCAGCAATTAAGGCTCTTGGATCCTTTAGGAGCAATGCTTAA 864 0.4086 MGKDVEVQEQGAEFSAKDYQDPPPAPLFDLGELTKWSLYRAVIAEFVATLLFLYITVLTIIGYSRQSDTTIEGNTECDGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFVGRKVSLIRALLYIIAQCLGAICGAGLAKGFQTSYYNRYKGGVNMVSDGYSKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFIGAAVAAIYHQYILRGSAIKALGSFRSNA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04273 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 10 276 IPR034294 -
Trre11g04273 287 FunFam Probable aquaporin PIP1-2 25 287 - -
Trre11g04273 287 NCBIfam MIP family channel protein 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre11g04273 287 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre11g04273 287 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre11g04273 287 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre11g04273 287 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre11g04273 287 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre11g04273 287 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre11g04273 287 SUPERFAMILY Aquaporin-like 32 272 IPR023271 -
Trre11g04273 287 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Trre11g04273 287 CDD MIP 40 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre11g04273 287 Pfam Major intrinsic protein 32 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre11g04273 287 Gene3D Glycerol uptake facilitator protein. 25 287 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04273 Trre-Chr11 55315493 55317339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04273 1 285 Major Intrinsic Protein MIP AT5G60660 77.193 2.84e-166 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04273 K09872 - gmx:732581 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04273 11 55315493 55317339 Trre11g04273 11 55315493 55317339 ECH
Trre13g04268 13 50221559 50223016 Trre11g04273 11 55315493 55317339 ECH
Trre11g04273 11 55315493 55317339 Trre7g01613 7 12330380 12331955 PCT