Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04271 ATGCAAATTCTGTTAAGGATAAGGCTGCTCCTACTCATAATACTTCAGTTGTTATTATACTTCATATTATCTTCTGAGGCTTTGTTAACTTTCAAAAGTTCACTTGAAACTGGTCCACAAGGATGTCAAATGCAATGGCCTTGTCTTGACTTCTCTAATGAACCAGGTGGAGTAAAAGCAAATATAGACAGCAACAATGAAACTCCAACAATTACACCATCCCTTAAAGAATCTCAAGTTAAAAAACAAGGAGGAAGAAGCGTTGCCGCCATAGTCGGTGCTACTGGTGGAACCTTAGTCATCATTGTGATAGTGGTGATTGTTTATATTTGCTTGAGAAGATGTGAAAGATTTAAAAGACAAACTTCTGATTCTGCTTCTTCTGTTCCATCACAAGCTGTTGAGATGGGAAGAATCAACAGCTCGCAGTATGTTAATGCATTCTCTCCGCATTATATGCAGAACACAAGACTATTAACAATTTTGGAGCTAGAACAAGCTACAGGAAATTTCGGTCAAAGTAGCATCATAGGTGAAGGAAGATTTGGTTTTGTATACAAAGGTTTACTTCGAGATGGATCTTTTGTCGCTATAAAAAGGCGTTTATTTGCTCTTACTCGAGATTTTATCCTAGAGGTTAAGCAGATAGCTCAAATTCATCACATTCATCTTGTTAAGCTTATAGGCTATTATGAAGATAATTATCAACAATTACTTGTGTATGAATATCTCTCTAATGGCAATATAGGGAATCATCTTTATGACAATGAAGGTTTACCTATTGGAAAACTTGACTTGCGGCGTAGGGTATCCATCGCCTTAGGCGCGTCCAAAGGACTGGAACATCTTCATAGTTTGGTCCCACCTATGTTTCACACAAATTTTAGTACAATAAATGTTCTGTTAGATGAAAATTATACTGCAAAAGTTTCTGATTATGGATTCTGCAAATTGCAAACAAAAGTTGATCAGGCATGTTCATCTTCAAATGTTGACTACTTTCATGATCCAGAGTTGAGCTTATCACAAAACTATTCGGAGCAGAGTGACGTATACAGTTTCGGAGTGTTTTTACTCGAGTTGGTTACTGGTTGTGAAGTCCATAACAGAAACATGTCACACCAAGATGAAAATCTAGTATCTCAGGTAAAAAATAGCAATGTTTTGGACAAGTTTATTGACATAACATTGGGAGAGCAAGAAAAGGTTGCTGCTAGAAGAATGATGAAGTTGGCTTTAATATGTGTGGATGTGACTTATAGAAGACCATCAATGGCACATATTGTGCAAGAATTGGAGAGGATACAAAGAGATATTGCTCCTTTGTATTCTGAAATCAATGAGGAGATTGGTATTGTGACTCTTGGGAGTGAGCTCTTCCAATAA 1386 0.3687 MQILLRIRLLLLIILQLLLYFILSSEALLTFKSSLETGPQGCQMQWPCLDFSNEPGGVKANIDSNNETPTITPSLKESQVKKQGGRSVAAIVGATGGTLVIIVIVVIVYICLRRCERFKRQTSDSASSVPSQAVEMGRINSSQYVNAFSPHYMQNTRLLTILELEQATGNFGQSSIIGEGRFGFVYKGLLRDGSFVAIKRRLFALTRDFILEVKQIAQIHHIHLVKLIGYYEDNYQQLLVYEYLSNGNIGNHLYDNEGLPIGKLDLRRRVSIALGASKGLEHLHSLVPPMFHTNFSTINVLLDENYTAKVSDYGFCKLQTKVDQACSSSNVDYFHDPELSLSQNYSEQSDVYSFGVFLLELVTGCEVHNRNMSHQDENLVSQVKNSNVLDKFIDITLGEQEKVAARRMMKLALICVDVTYRRPSMAHIVQELERIQRDIAPLYSEINEEIGIVTLGSELFQ 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04271 461 ProSitePatterns Protein kinases ATP-binding region signature. 177 199 IPR017441 GO:0005524
Trre11g04271 461 ProSiteProfiles Protein kinase domain profile. 171 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04271 461 SUPERFAMILY Protein kinase-like (PK-like) 150 442 IPR011009 -
Trre11g04271 461 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 99 435 IPR047117 -
Trre11g04271 461 Gene3D Phosphorylase Kinase; domain 1 131 243 - -
Trre11g04271 461 Gene3D Transferase(Phosphotransferase) domain 1 244 450 - -
Trre11g04271 461 Pfam Protein tyrosine and serine/threonine kinase 175 432 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04271 Trre-Chr11 55285537 55288478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04271 153 435 Receptor kinase-like Gene Family AT1G79620 37.417 9.20e-52 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Trre11g04271 PK_Tyr_Ser-Thr 3.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04271 - - psat:127087040 669.077