Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04266 ATGAATTCTCACCAAAAACATGATCATCATCAATTTTCTTCTTGCAAAAGAACACTTTCTCTTCCACTTCACAAGGAGAATCTATTAATGGAAAAACCCTACAAAAAATCAGAAGAAGAATCTTGTTCATCAAAGGAATTTGTTGGAATAAAGATGCCATTAACACCAGCAAGTCCAACAGGAAGTAACAAAAGGGTGAATTTTCTTGTGACATCACGTTCAGTTGATGCACCAATTGATAATAATAGCAATTTAGGGTTTACAACAACAAAGGGAAAATCATCATCAAATAGTAGAAGTAGTATATTACCAAAATTGAATTTCAGGTATAATAGGACAACATCAACATCATCATCAACAACAGTATCAGATATTGAAAAGGGTATAATTGCAAATCCAGAAAGTTCTTTTATAGGTCCTCAAGAAAAGCCTTCAATTTCAGGATCAGTGTCTTTGAGTAAGATATTTAATCCTAAGATTAATAGGACTTCATCATTGCCTGTTGAAGAAATTGGACGTGTTAATACAGAATTTGCTTTTGGTGGATGTCTTGGTGCTTCTCCTTATAGAAGCCAAACGACGATAGCTCGATCTCGTTCTGAGCCTGTAGATACTCAAGAAAAAACCATAAGGAAAATGGATACGTTTTTCCGCATTATTCCTTCCACCCCAGGTGTAGCGAAAGAATGGTTAAAAGCATCGACAGAAAAGGATACTGAAAATGACGGTGGCGACAATGACGGCGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGAATTTGTCTGATTGAGCTATGTGAAGGAGGCGAGACATTGAAGATGGAATGCTGTTGCAAAGGTGAACTTGCGTTGGCTCACCAAGAATGCGCTATCAAATGGTTTAGTATCAGAGGTAACAAGACCTGTGATGTGTGCAAGGAAGAAGTTCAGAATCTCCCTGTCACTCTTTTAAGGATCCAAAATGTTCAAACTCAAAATACTGGTGCAAGGATTCTGGAGGACGATGACTTCAGGGTTTGGCAAGAGTTGCCTGTGCTTGTCATTGTTAGCATGCTTGCTTATTTCTGTTTCCTTGAGCAGCTTTTGGTTGGAAAAATGGGAACCAAAGCAATTTTCATTTCTCTTCCGTTTTCTTGTGTACTCGGTCTAGTCTCCGCCATGACATCAACAACCATGGTTAGGAACAGGTTCCTCTGGCTTTATGCATCTGCTCAATTTCTTTTGGTGGTTCTCTTTGCGCATATATTTTACCCCTTGTTTCATAACCTGCAGGTTGGTAAGCAAGCAGTTTTGGCGATCCTTCTTGCATCATTTGCAGGGTTTGGTGTAATGATGAGCGGAAGTTCAGTTTTTTCGGAGTTACTCAGATGGAGAAGAAGATGGCAGGCTCACTCAGAGCAGCGTCGTGGCTCACAAGCGATGACACAAGAAGGACTATATTCTCAAGGTGCAATTACACCACAATCAAGTCTTCCCAACCAAATCCATACTACAGTGCAAATGCAAAATCAACAGAACTCTAATTCATAG 1533 0.3953 MNSHQKHDHHQFSSCKRTLSLPLHKENLLMEKPYKKSEEESCSSKEFVGIKMPLTPASPTGSNKRVNFLVTSRSVDAPIDNNSNLGFTTTKGKSSSNSRSSILPKLNFRYNRTTSTSSSTTVSDIEKGIIANPESSFIGPQEKPSISGSVSLSKIFNPKINRTSSLPVEEIGRVNTEFAFGGCLGASPYRSQTTIARSRSEPVDTQEKTIRKMDTFFRIIPSTPGVAKEWLKASTEKDTENDGGDNDGGEDIAEEEAVCRICLIELCEGGETLKMECCCKGELALAHQECAIKWFSIRGNKTCDVCKEEVQNLPVTLLRIQNVQTQNTGARILEDDDFRVWQELPVLVIVSMLAYFCFLEQLLVGKMGTKAIFISLPFSCVLGLVSAMTSTTMVRNRFLWLYASAQFLLVVLFAHIFYPLFHNLQVGKQAVLAILLASFAGFGVMMSGSSVFSELLRWRRRWQAHSEQRRGSQAMTQEGLYSQGAITPQSSLPNQIHTTVQMQNQQNSNS 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04266 510 CDD RING_CH-C4HC3_MARCH 259 307 - -
Trre11g04266 510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 314 IPR013083 -
Trre11g04266 510 PANTHER OS02G0165000 PROTEIN 22 477 - -
Trre11g04266 510 SUPERFAMILY RING/U-box 255 310 - -
Trre11g04266 510 Pfam RING-variant domain 259 306 IPR011016 GO:0008270
Trre11g04266 510 ProSiteProfiles Zinc finger RING-CH-type profile. 251 313 IPR011016 GO:0008270
Trre11g04266 510 SMART ringv_2 258 307 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04266 Trre-Chr11 55260908 55264554 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04266 256 313 C3H Transcription Factor Family AT2G37950 42.373 2.67e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04266 - - cam:101488558 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04266 11 55260908 55264554 Trre11g04266 11 55260908 55264554 ECH
Trre11g04266 11 55260908 55264554 Trre7g01621 7 12404806 12408071 PCT