Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04263 ATGCTGGAACATCCTAATATAGTTAATCTCATCGAGGTGATTGATGACCCAGAGTCGGATGACTTCTACATGGTGCTTGAATATGTGGAAGGCAAATGGGTTTGTGAGGGTTCAGGTCGACAGTGTGCCATAGGTGAAGAAACCGCTAGGAAATACATGCGTGATATAGTCTCGGGATTAACATATCTTCATGCTCATAATATAGTGCATGGCGATATAAAACCTGATAACCTGTTGATTACTCACGATGGGACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGACTGGTAACGATGAACTTCGTCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTTGTTTAGGTCTCACCTATCATGGTAAAGCTTCAGACACATGGGCAGTAGGAGTTACTTTGTACTGTATGATATTGGGTGAATACCCGTTTCTCGGAGACACACTTCAAGATACATACGACAGAATAGTCAATAATCCTATAGAAATCCCAGATGACATAAACCCGCAGTTAAAGAATTTAATAGAAGGATTGCTTTGCAAAGACCCAGAACAAAGAATGACATTAGCTGAAGTTGCCGAGCATGTCTGGGTTATTGGAAATGATGGGCCAATTGGCGAGTACTGGTGTTGGTGCAAACGCAAGAGTGTGGTGAGTGAAGACTTTGAGGAGAGCAATGTGCTTGTTTGA 702 0.4288 MLEHPNIVNLIEVIDDPESDDFYMVLEYVEGKWVCEGSGRQCAIGEETARKYMRDIVSGLTYLHAHNIVHGDIKPDNLLITHDGTVKIGDFSVSQAFETGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDRIVNNPIEIPDDINPQLKNLIEGLLCKDPEQRMTLAEVAEHVWVIGNDGPIGEYWCWCKRKSVVSEDFEESNVLV 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04263 233 FunFam Serine/threonine-protein kinase GRIK1 isoform A 40 209 - -
Trre11g04263 233 ProSitePatterns Serine/Threonine protein kinases active-site signature. 68 80 IPR008271 GO:0004672|GO:0006468
Trre11g04263 233 CDD STKc_LKB1_CaMKK 2 202 - -
Trre11g04263 233 SMART serkin_6 1 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04263 233 PIRSF ILK 1 213 - -
Trre11g04263 233 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 1 205 - -
Trre11g04263 233 SUPERFAMILY Protein kinase-like (PK-like) 2 213 IPR011009 -
Trre11g04263 233 ProSiteProfiles Protein kinase domain profile. 1 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04263 233 Pfam Protein kinase domain 2 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04263 233 Gene3D Transferase(Phosphotransferase) domain 1 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04263 Trre-Chr11 55233699 55235911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04263 1 208 CBL-interacting serine-threonine protein kinases AT2G25090 32.258 9.67e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Trre11g04263 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04263 K00908 - gmx:100807940 440.269