Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04252 ATGATGTCTGAAGAAGCTGTTTCTGTTCCATCCAACTTCAGAGCTACCTCAAACTCAAACCCTAATTCAAATTCAGTTAAGAGAAAAAGAAGTCTACCAGGAACACCAGATCCAGATTCAGAAGTGATTTCTTTGTCACCAAAATCACTTATGACAACAAACCGTTTCATCTGCGAAGTATGCAACAAGGGTTTCAAGAGAGACCAAAACCTACAGTTACATAGAAGAGGACACAATCTTCCATGGAAGCTTAAGCAGAGAAATCCTCTTGAAGTAATAAAGAAGAAGGTGTACGTGTGTCCGGAGAAGAGCTGTGTGCACCATGACCCTAGTAGAGCTTTAGGAGATTTAACTGGGATTAAAAAGCACTTTAGTAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGATAAGTGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAGGCTCATAGTAAGATTTGTGGTACTAGAGAGTACAGATGTGATTGTGGGACACTATTCTCCAGGAAGGACAGCTTCTTAACACATAGAGCTTTTTGTGAATCCTTGGTAGAAAGAAATGCAAGAATAGGTTCAATTAATCCAGCAGTTTTATCCAACTATGGAAACAATCTTATGATCAACACTCAACCACAAAGAATTCCTCATCAAGGTTTATTTGGGTTTAATCAAGAATTTGGTGGGCCAGGCCCAGAAACATTCATGGCAACAAATTTTCCCAATAATATCAATTTATTCTCATCATCAGCATCAGCATCAGCATCAGGAACAAACTCTGATTTAGAATTAGTCCTCACAAATAATATGAACACATTTGGTAACTCTTCATTATTACCACAAGGACAATGGAATATGAATTACCGTTACAATGATCATCAACAAGATGCATCATTTATAAGTAGTGGGGCTATATCTATGCCTATGTCTATGAATATGATGCATGCTTCTCAAGGAGTACTACTAAAGCTAGAACAACAACAAGAAGACAAAATTATGCATGCTGATTTGTCTCATTTGTATTCTCACAACCAATTACAAGAAGGTCCAAGTCATCACGTGTCAACAATGGAATCTACAACTACAAATGTTATGATCAATGGTAATAATAATAATAATAACAATGTTGTTGCTGCTAATTTCAATAATAATAATATTGTTGAAATGAAGAAATTGTTCAAGCAAGGAAATGTCTTGCATGATGGAGACAAACATGAATTGAGCTTAACTAGAGATTTTCTTGGTGTTGAATCATTGAAGAGACCTTTCTTACCACAACAGGAGGTTCCTAGGTTTAATCCTATAGGATCTGTCATGGACATGCAAAATGATCAGTTTGGTGGACACTATTGA 1353 0.3651 MMSEEAVSVPSNFRATSNSNPNSNSVKRKRSLPGTPDPDSEVISLSPKSLMTTNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQRNPLEVIKKKVYVCPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFLTHRAFCESLVERNARIGSINPAVLSNYGNNLMINTQPQRIPHQGLFGFNQEFGGPGPETFMATNFPNNINLFSSSASASASGTNSDLELVLTNNMNTFGNSSLLPQGQWNMNYRYNDHQQDASFISSGAISMPMSMNMMHASQGVLLKLEQQQEDKIMHADLSHLYSHNQLQEGPSHHVSTMESTTTNVMINGNNNNNNNVVAANFNNNNIVEMKKLFKQGNVLHDGDKHELSLTRDFLGVESLKRPFLPQQEVPRFNPIGSVMDMQNDQFGGHY 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04252 450 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 15 421 IPR031140 -
Trre11g04252 450 SUPERFAMILY beta-beta-alpha zinc fingers 55 153 IPR036236 -
Trre11g04252 450 Gene3D Classic Zinc Finger 44 127 - -
Trre11g04252 450 Gene3D Classic Zinc Finger 128 189 - -
Trre11g04252 450 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Trre11g04252 450 FunFam protein indeterminate-domain 12-like 35 104 - -
Trre11g04252 450 MobiDBLite consensus disorder prediction 1 45 - -
Trre11g04252 450 Pfam Zinc-finger double-stranded RNA-binding 56 78 IPR022755 -
Trre11g04252 450 SMART c2h2final6 133 153 IPR013087 -
Trre11g04252 450 SMART c2h2final6 98 128 IPR013087 -
Trre11g04252 450 SMART c2h2final6 56 78 IPR013087 -
Trre11g04252 450 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Trre11g04252 450 MobiDBLite consensus disorder prediction 1 30 - -
Trre11g04252 450 FunFam protein indeterminate-domain 5, chloroplastic-like 111 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04252 Trre-Chr11 55174797 55176867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04252 26 197 IDZ Gene Family AT3G45260 84.884 1.49e-110 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre11g04252 zf-C2H2_jaz 2.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04252 K25870 - gmx:100815213 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04252 11 55174797 55176867 Trre11g04252 11 55174797 55176867 ECH
Trre11g04252 11 55174797 55176867 Trre7g01636 7 12508421 12510469 PCT