Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04251 ATGGAGGGACAACAAAAGGGATCCAAATCTAGTTACATTTTTCCGCCCGGTTTTCGATTCCATCCTTCTGATGAAGAACTCATAGTTCATTACTTGCAAAACAAAATCAAGTCGCGTCCGCTTCCAGCTTCTATTATAGCTGAAATTGATCTCTATAAGTATAATCCATGGGAGTTACCAATGAAGTCTTTATTTGGGGAGGGAGAATGGTATTTCTTTAGTCCGAGAGACCGAAAGTATCCGAATGGATTAAGGCCGAATAGAACAGCAGCTTCAGGATACTGGAAAGCAACTGGAACTGATAAGCCAATAATTTCTTCTTGTGGATCAAAGCATATAGGAGTGAAGAAAGCTCTCGTGTTTTATTCAGGTAGACCTCCTAAGGGTTCAAAGACAGATTGGGTCATGAATGAGTATAGGTTGGTTGACACAAATACAAAATCATTCAGACTAAAAGGTTCGATGCGGTTGGATGACTGGGTATTGTGTCGGGTTCGACATAGAGGCTACTCACTGAAGAATGTATCAGAGAATCAAGAGAATCCTTGCGAGCCAAGCATGCCAGTAAACCTACCGAAAGTGGAAGAACAACGTCCAACAAACACGAACTTTCGAGCTGACATGGTCGCAGATTATCAGTACAAAGACTATCAGATCATAGCCTCTATTCTTGTTGGTGGAGGAGTTATACCTCCAAGTGAGAACATGCCAAGTTTGAGCTTTGAAGGAAGCAAAGGAAATAATCTAACTTCAGATTATGAAGAAGGTTTCAATAAAGTGAATTGTCAAACTTCAATCCCTTCTTTGGAATGTTACTTCAACCCACTGAAAAGGAAATCTATTGAAGATGATGATCAGTTTGAAAATCTTATTTCTTTTAACAGCAGGTTCAACAATGTCAACAAAATAGACAAATCCCCTAGCATCGATTTTAAAGCGCTAAACGAATTAAACTTTGCAGAAAGATACCAGCAGCGATGA 981 0.3955 MEGQQKGSKSSYIFPPGFRFHPSDEELIVHYLQNKIKSRPLPASIIAEIDLYKYNPWELPMKSLFGEGEWYFFSPRDRKYPNGLRPNRTAASGYWKATGTDKPIISSCGSKHIGVKKALVFYSGRPPKGSKTDWVMNEYRLVDTNTKSFRLKGSMRLDDWVLCRVRHRGYSLKNVSENQENPCEPSMPVNLPKVEEQRPTNTNFRADMVADYQYKDYQIIASILVGGGVIPPSENMPSLSFEGSKGNNLTSDYEEGFNKVNCQTSIPSLECYFNPLKRKSIEDDDQFENLISFNSRFNNVNKIDKSPSIDFKALNELNFAERYQQR 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04251 326 Gene3D NAC domain 23 171 IPR036093 GO:0003677|GO:0006355
Trre11g04251 326 SUPERFAMILY NAC domain 11 168 IPR036093 GO:0003677|GO:0006355
Trre11g04251 326 FunFam NAC domain-containing protein 72-like 23 173 - -
Trre11g04251 326 PANTHER NAC TRANSCRIPTION FACTOR 56 14 193 - -
Trre11g04251 326 ProSiteProfiles NAC domain profile. 14 168 IPR003441 GO:0003677|GO:0006355
Trre11g04251 326 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04251 Trre-Chr11 55154587 55156498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04251 10 171 NAC Transcription Factor Family AT1G69490 67.485 1.22e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre11g04251 NAM 2.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04251 - - gmx:100817193 490.345