Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04250 ATGTCTGTCATCGACATTCTCTTCCGTGTTGACGCCGTTTGCAAAAAATATGACAAATATGACATTGATAAACAGCGTCAACAAAATGCTTACGGTGATGATGCATTTGCTCGTGTCTATGCTGTTGTTGATTCCACCATTCAACAAGCTCTCACTAAATCTGAGGCTGCTGCAAAGGAGAGTAACAGGGCAGTTGCTGCGGCTTGGAATGCTGAGGTTCGTAGAGCCAAGGGGAGATTGATGGACGAAGTTCCTAAACTTCGTAAGCTGGCTAATAAGAAGGTTAAAGGTCTAACAAGTGAAGACATAGCCATTCGTCAAGATCTTGTTCTTGTATTGCCAGAAAGAATCCAAGCAATACCAGACGGCATTACAGCTGCTGCTAGTCATACTGGAGGATGGGCAGCTACATCAAATCATCCGCATATCAAGTTCGATACACCAGAGGGACCTGTTGACAGTGAATATTTCAATCATAGTGAAGAGTCCAGTCAGTTTCGACAAGAATATGAAATGCGCAAGTTGAAACAGGATGAAGGGCTTGATATCATATCAGAAGGATTGGATACTTTGAAAAATCTAGCACTTGATATGAATGAGGAAATGGATCGGCAAGTTCCTTTAATGGATGAAATTGACTCGAAGGTGGATAGGGCAAACAGTGATGTGAGAAACACTAACTTAAGGCTCAAGAAAACTATCACCGAGCTGAGGTCCAGTCGAAATTTCTGCATCGACATAACTCTAATGTGTGTTCTTCTGGGAATCATTATGTATTTATACAAGTAA 789 0.4157 MSVIDILFRVDAVCKKYDKYDIDKQRQQNAYGDDAFARVYAVVDSTIQQALTKSEAAAKESNRAVAAAWNAEVRRAKGRLMDEVPKLRKLANKKVKGLTSEDIAIRQDLVLVLPERIQAIPDGITAAASHTGGWAATSNHPHIKFDTPEGPVDSEYFNHSEESSQFRQEYEMRKLKQDEGLDIISEGLDTLKNLALDMNEEMDRQVPLMDEIDSKVDRANSDVRNTNLRLKKTITELRSSRNFCIDITLMCVLLGIIMYLYK 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04250 262 SMART tSNARE_6 166 233 IPR000727 -
Trre11g04250 262 CDD SNARE_Qc 176 232 - -
Trre11g04250 262 FunFam Putative syntaxin-71-like 171 232 - -
Trre11g04250 262 Gene3D - 171 232 - -
Trre11g04250 262 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 171 233 IPR000727 -
Trre11g04250 262 Pfam SNARE domain 208 257 IPR000727 -
Trre11g04250 262 SUPERFAMILY SNARE fusion complex 164 232 - -
Trre11g04250 262 PANTHER SYNTAXIN 48 256 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04250 Trre-Chr11 55151765 55153990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04250 1 261 SNARE and Associated Proteins AT3G09740 64.259 2.67e-127 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04250 K08506 - gmx:100777251 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04250 11 55151765 55153990 Trre11g04250 11 55151765 55153990 ECH