Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04247 ATGGAAATTGATCTGAATGATGAAGTAACTGAAGTTGAGAACAAGAATAAGAACAAGAAGAATAATGTGTCTTGCAATGGTGACTGTGAGAAAAGTGTTTGTGTTTGCACTTTATCTTCTTCTTCTTCACCAACATGTTCATCTTCTAGTTCTTCTTCAGCTCTTGTTTCTTCTTCTTATCTTGAGCTATGGCATGCTTGTGCTGGTCCTTTAACATCACTTCCAAAGAAAGGGAATGTTGTAGTTTATTTTCCACAGGGTCATTTGGAACAATTTTCATCTTTGTCTCTTTTTTCTCCATTGGAGATTCCAACTTTTGATCTTAAGCCACAAATCTTTTGTAGGGTTGTCAATGTTCAATTACTTGCCAATAAGGAGAATGATGAGGTTTACACACAGGTTACTTTGCATCCACAGGCAGAGTTAGAAGGGATGTGTTTGGATGGCAAAGAGTGTGAAGGGTTGGAAGCAGATGAAGATGGAAATGGAAAAACAACACCTGCAAAATTAGCTTCTCACATGTTTTGCAAAACACTCACTGCCTCTGATACCAGCACTCACGGAGGGTTTTCTGTTCCTCGTCGAGCTGCTGAAGATTGTTTTCCTCCTTTGGATTATAAGCAGGAGAGACCCTCTCAAGAGCTTGTTGCAAAAGATCTGCATGGTGTGGACTGGAAATTTCGTCATATTTACAGAGGTCAGCCAAGGAGGCATCTGCTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGTGATGCAGTGCTCTTTCTAAGGGGTGAAAATGGTGAGTTAAGATTGGGAATCAGAAGAGCTGCTCGACCGAGAAATGGTCTTCCTGAATCAATTGTTGGTAACCAGAGTTGTTCTCCGAGTTTTCTTTCCTCCGTAGCTAATGCTATCTCTGCAAAAAGCATGTTCCATGTTTTCTACAGTCCAAGAGCAAGTCATGCGGATTTTGTTGTCCCTTACCAAAAGTATGTTAAAAGCATTAGGAGTCCGGTAACCATAGGGACAAGATTCAAAATGAAATTTGAAATGGACGAATCTTCGGAAAGAAGGTTTAGCGGTGGTATAGTGATTGGAATGAGTGATTTGGATCCCTATAAATGGCCCAAGTCAAAATGGAGATGCCTTATGGTCAGATGGGATGAGGATATTGAGACTAATCGACAAGATAGAGTCTCTCCTTGGGAGATTGATCCTTCTAATTCTCTCCCTCTCTTGAACATTCAATCTTCTCGAAGGCTGAAGAAACTCCGGACGGATCATCAAGCTGACACCGCCAGTCACCTTATCACTGGAGACGGCGGGTTTATGGACTTTGAGGAGTCTATAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAAAACAAGTTTTATGTCACTATATTATGGATGTGACACAGTAACTAAGAAGGCAGAATTTGATATCAATTCTCTAAGTCATTCTCATACTAATCATGCATCAACTGGAGCAAGAAAGATTACTTCTGCTGAGTTTACGAGGGTTCACCCTTCTAGTTACGCAGGCTTCACGGAAACGAACCGGTTTCCTAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAGATCCCTGACAGGAAAGGTTGATTTAAACCTTAATTCTTGGGGTAAAACCAATGTCAGTTACACAAATTACAACCTGCATCAGCAAGCAACAAAACCTAACTTTCACTCTTTAGGGTCGGAAATTCTTCAAAGTTCCTATTTTCCTTATGGCCAAGGTAGCAGCATTTTGTGCTCTAAATCCACAAATTTCAACCTAGAGAGTGTTCCATTTAACACTCCTTCAGCTCAGATAGGTACATTGAAAAATGAAGTTGGACTGTCAAGTTTCGCAATCCAAAACGAGCAGAAGCTGCAGGACAATATTTCGGCTGCTACTTCTCTAGGTGCAAACATGAGGATTTCAAATGATGAAAATTTTAAGGGGAAGGTAAATCCTTGCAAACTATTTGGATTTTCCTTGTCTGCGGCGGAAACCACCTCACCAAATTTACAGAACTCTGCTAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTCGGACGAGCCGTTGATCTCTCAAGATTGAGCAGCTACAATGATCTGGTGAGTGAACTAGAGAGACTATTTGCCATGGAAGGCCTTTTAAGAGATTCTGATAAGGGATGGAGAATCCTCTACACTGACAGTGAAAATGACATTATGGTTGTTGGGGATGATCCATGGAATGAATTTTGTGATATGGTATCCAAAATTCATATACATACACAAGAAGAAGTGGAGAAGATGACAATTGGGATGATGAATGATGATAATCAAAGCTGTTTGGAACAAACACCACTGATTATGGAAGCTTCAAAGTCATCCTCAGTAGGTCAACCAGATTCTTCTCCAACCGTGTTTAGAATCTAG 2439 0.4067 MEIDLNDEVTEVENKNKNKKNNVSCNGDCEKSVCVCTLSSSSSPTCSSSSSSSALVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQFSSLSLFSPLEIPTFDLKPQIFCRVVNVQLLANKENDEVYTQVTLHPQAELEGMCLDGKECEGLEADEDGNGKTTPAKLASHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQERPSQELVAKDLHGVDWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVGNQSCSPSFLSSVANAISAKSMFHVFYSPRASHADFVVPYQKYVKSIRSPVTIGTRFKMKFEMDESSERRFSGGIVIGMSDLDPYKWPKSKWRCLMVRWDEDIETNRQDRVSPWEIDPSNSLPLLNIQSSRRLKKLRTDHQADTASHLITGDGGFMDFEESIRSPKVLQGQEKTSFMSLYYGCDTVTKKAEFDINSLSHSHTNHASTGARKITSAEFTRVHPSSYAGFTETNRFPRVLQGQEICPLRSLTGKVDLNLNSWGKTNVSYTNYNLHQQATKPNFHSLGSEILQSSYFPYGQGSSILCSKSTNFNLESVPFNTPSAQIGTLKNEVGLSSFAIQNEQKLQDNISAATSLGANMRISNDENFKGKVNPCKLFGFSLSAAETTSPNLQNSAKRSCTKVHKQGSLVGRAVDLSRLSSYNDLVSELERLFAMEGLLRDSDKGWRILYTDSENDIMVVGDDPWNEFCDMVSKIHIHTQEEVEKMTIGMMNDDNQSCLEQTPLIMEASKSSSVGQPDSSPTVFRI 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04247 812 SUPERFAMILY DNA-binding pseudobarrel domain 167 287 IPR015300 -
Trre11g04247 812 Gene3D - 172 277 IPR015300 -
Trre11g04247 812 ProSiteProfiles PB1 domain profile. 684 766 IPR000270 GO:0005515
Trre11g04247 812 ProSiteProfiles B3 DNA-binding domain profile. 175 277 IPR003340 GO:0003677
Trre11g04247 812 Gene3D - 339 411 - -
Trre11g04247 812 FunFam Auxin response factor 679 773 - -
Trre11g04247 812 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 59 773 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre11g04247 812 SUPERFAMILY CAD & PB1 domains 686 764 - -
Trre11g04247 812 CDD B3_DNA 173 275 IPR003340 GO:0003677
Trre11g04247 812 Pfam Auxin response factor 301 383 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre11g04247 812 SMART B3_2 175 277 IPR003340 GO:0003677
Trre11g04247 812 FunFam Auxin response factor 338 411 - -
Trre11g04247 812 FunFam Auxin response factor 173 277 - -
Trre11g04247 812 Gene3D - 680 773 - -
Trre11g04247 812 Coils Coil 2 22 - -
Trre11g04247 812 Pfam B3 DNA binding domain 175 276 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04247 Trre-Chr11 55126508 55130997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04247 56 812 B3 DNA Binding Superfamily AT5G60450 58.831 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre11g04247 B3 3.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04247 - - gmx:100812909 1239.94