Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04246 ATGGATTTGATATCTAATTGCAAGGAAAAATTGGCATATTTTCGGGTAAAAGATCTCAAAGATGTGCTTACTCAAGTAGGGCTTTCAAAGCAGGGAAAGAAACAGGATCTTGTCGATAGAATATTATCTATTCTCTCGGATGAACAAGTTGTCAAAATAAGTGCTAAGAAGAATGCTGTTGATAAAGAACAAGTGGTAAAATTAGTGGATGACACATATAGAAAATTACAGGTATCTGGAGCCACTGATACAGCATCAAAGGGGCACGGTGCTTCAGACAGCAGTAATGTGAAAATTAAAGGTGAAGTTGCTGATTCCTCTCAATCAGATACAAAGGTTCGCTGTCTCTGTGGAAGTTCATTGGAAACAGATCTATTGATCAAGTGTGAAGATACAAAATGCCCTGTGTCGCAGCATATCAACTGTGTTATTATTCCGGATAAACCCATTGAAGATCTCCCGCCACTTCCAGATAAATTTTATTGTGAAATATGCCGTCTCAGTCGTGCAGACCCGTTTTCGGTTTCAATGACACACCCTTTATATCCAGTAAAGTTGTTTACAACCCATATTGATGGAAACAACCCTGTGCAGGGTGTTGAGAAAACATTTCAACTTACAAGAGCAACCAAGGATTTGTTATTAAAACAAGACTTTGAAATTCAGGCTTGGTGCATGCTTCTGAACGACAAAGTTCCATTCAGGATGCAATGGCCACAATATGCAGACCTACTGGTCAATGGTTATTCTGTTCGTGCAATTAATAGACCTGGCTCACAATTGCTTGGGGCTAATGGTCGTGATGATGGCCCAATTATCACACCATATACAAAAGAAGGAATTAACAAGATTTGTTTGACGGGGTGCGACACTCGCATTTTTTGTTTAGGGGTCCGCATTATTAGAAGGCGCACCGTGCAACAGGTCCTGAGCTTGATTCCAAAGGAGTCTGATGGTGAGCGTTTTGAAGCTGCTCTTGCACGTGTCTGTTGTCGTGTCGGGGGTGGAAATTCAGCCAATGAAGCTGATAGTGACAGTGATCTGGAGGTGGTTTCAGATACTTTTAGCATCAACCTCCGTTGTCCGATGAGTGGTTCAAGAATGAAGGTTGCAGGAAGATTCAAACCTTGTGTTCACATGGGTTGTTTTGATCTTGAAGTTTTTGTGGAAATGAATCAACGTTCAAGAAAGTGGCAATGCCCCATATGTCTCAAAAACTATGCATTGGAGAATATCATTATTGATCCTTATTTCAATCGCATCACTTCTATGATGAAAAACTGTGGGGAAGAGTTTACAGAGGTGGAGGTGAAGCCTGATGGTTATTGGCGTGTCAAAGCTAAGAATGAAAGTGAATGCCGCGAGTTAGGGAATCTTGCTAAATGGCACTCCCCCGACGGATCCCTCTCTGTTTCGACTAGTGGAGAAGACAAGAAAGTGGAAACTTTGAATGTCAAACAGGAAGGTGTTTCAGACAGTCCTAATCACTTAAGACTTGGCATTAGGAAAAATTGTAATGGAGTTTGGGAAGTAAGCAAACCCATTGACACAAACACCTCTTCTGATAATAGGTTGAATGCAAATTTAGGAAATCATGAACTCGTGGTTATTCAAATGAGCAGCAGTGGCACTGGAAGCGGATTGGATGGTGATGATCCAAGCGTAAATCAGAGTGGTGGTGGTCATATAGATTATTCTACTACCAATGGGATTGAGACGGATTCTATGCGTCACACTAATGTTAATTCAACTTATGGAAAAAGTATTCCTAACATTTCTGCTCCAATAATGGTTGATGCAAATATTATTGTTCTTAGTGATTCTGATGATGATGATATATTAGTATCTCCTACAGTTGGTTGCAACAATAATCAAACTGGTGATGCAGTTGATGTTTACTCGGTGCCTCCACCTGGAATTACCGATCCATATGCTGGAGATCATAATATTGATGGAAATCCATGCTTGGGAGTTTATGATAATCCCGGTGATTGTTTTGGGGTTCCCTCTGTCTGGCCATTGCATTCTGGAACTCAGGCAAGCTCAGGATTCCAACTATTCAGTTCTGACGTGGATGTGTCTGATGCATTAGTTCATGGCGATATTAATTGCTCCTCATCACTGAATAGTTATTCATTGGCTCCGGACACTGTTCTGGCATCTAATACTCTACTACCAAATTCATCCACTGATCAGTCCGACACTGATTTAAATGGTGGCTTGGTTGACAATCCATTGGCATTTGGTGGAGACGATCCCTCACTTCAGATTTTTCTTCCTACAAAACCTGCTGAATCATCTGTGCGGCATGAATTAAGAGACTGCACAGATGTGTCGAATGGCGTCTGTACAGAGGATTGGTTCTCTCTTAGCCTTGGAGGTGGGGCTGGTGGCAGTAATGGTGATGCTTCCACACCAAATGGTTTGAGTTCTGGACCGCAAATTACATCCAGAAAAGATGCCACAGATCCTTTAACTGATACCGCTTCTTTGCTTCTTGGTATGAATGGTGCTGGTTCTGATGAAGCAAGTAGGAAAAGATCAAATGGTCCTTTCTCATTTCCCCGCCAAAAACGTTCAGTAAGGCAGCGCTTGCATCTTTCTATTGATTCGGATTCTGAGTAG 2625 0.4164 MDLISNCKEKLAYFRVKDLKDVLTQVGLSKQGKKQDLVDRILSILSDEQVVKISAKKNAVDKEQVVKLVDDTYRKLQVSGATDTASKGHGASDSSNVKIKGEVADSSQSDTKVRCLCGSSLETDLLIKCEDTKCPVSQHINCVIIPDKPIEDLPPLPDKFYCEICRLSRADPFSVSMTHPLYPVKLFTTHIDGNNPVQGVEKTFQLTRATKDLLLKQDFEIQAWCMLLNDKVPFRMQWPQYADLLVNGYSVRAINRPGSQLLGANGRDDGPIITPYTKEGINKICLTGCDTRIFCLGVRIIRRRTVQQVLSLIPKESDGERFEAALARVCCRVGGGNSANEADSDSDLEVVSDTFSINLRCPMSGSRMKVAGRFKPCVHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSMMKNCGEEFTEVEVKPDGYWRVKAKNESECRELGNLAKWHSPDGSLSVSTSGEDKKVETLNVKQEGVSDSPNHLRLGIRKNCNGVWEVSKPIDTNTSSDNRLNANLGNHELVVIQMSSSGTGSGLDGDDPSVNQSGGGHIDYSTTNGIETDSMRHTNVNSTYGKSIPNISAPIMVDANIIVLSDSDDDDILVSPTVGCNNNQTGDAVDVYSVPPPGITDPYAGDHNIDGNPCLGVYDNPGDCFGVPSVWPLHSGTQASSGFQLFSSDVDVSDALVHGDINCSSSLNSYSLAPDTVLASNTLLPNSSTDQSDTDLNGGLVDNPLAFGGDDPSLQIFLPTKPAESSVRHELRDCTDVSNGVCTEDWFSLSLGGGAGGSNGDASTPNGLSSGPQITSRKDATDPLTDTASLLLGMNGAGSDEASRKRSNGPFSFPRQKRSVRQRLHLSIDSDSE 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04246 874 CDD SP-RING_Siz-like 358 407 IPR031141 -
Trre11g04246 874 ProSiteProfiles Zinc finger SP-RING-type profile. 344 427 IPR004181 GO:0008270
Trre11g04246 874 SMART PHD_3 114 166 IPR001965 -
Trre11g04246 874 SMART sap_9 11 45 IPR003034 -
Trre11g04246 874 MobiDBLite consensus disorder prediction 83 103 - -
Trre11g04246 874 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 636 - -
Trre11g04246 874 MobiDBLite consensus disorder prediction 798 824 - -
Trre11g04246 874 SUPERFAMILY FYVE/PHD zinc finger 107 169 IPR011011 -
Trre11g04246 874 MobiDBLite consensus disorder prediction 797 874 - -
Trre11g04246 874 CDD PHD_Bye1p_SIZ1_like 114 165 - -
Trre11g04246 874 MobiDBLite consensus disorder prediction 724 739 - -
Trre11g04246 874 MobiDBLite consensus disorder prediction 842 856 - -
Trre11g04246 874 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 335 445 IPR013083 -
Trre11g04246 874 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 171 IPR013083 -
Trre11g04246 874 Pfam SAP domain 14 42 IPR003034 -
Trre11g04246 874 SUPERFAMILY SAP domain 1 64 IPR036361 -
Trre11g04246 874 FunFam E3 SUMO-protein ligase SIZ1 1 66 - -
Trre11g04246 874 ProSitePatterns Zinc finger PHD-type signature. 115 165 IPR019786 -
Trre11g04246 874 Pfam MIZ/SP-RING zinc finger 357 405 IPR004181 GO:0008270
Trre11g04246 874 Gene3D SAP domain 1 63 IPR036361 -
Trre11g04246 874 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Trre11g04246 874 MobiDBLite consensus disorder prediction 724 745 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04246 Trre-Chr11 55112680 55121762 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04246 - - tpra:123894614 1472.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04246 11 55112680 55121762 Trre11g04246 11 55112680 55121762 ECH
Trre11g04246 11 55112680 55121762 Trre7g01646 7 12577370 12587399 PCT