Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04237 ATGGAGAATGAGTACACAAACAAAATTACAAACACATCAATTTCCTCTCCTCTATTTTATAACTCTTCAACTTCTTCACAACCAACTTTGGTTCCTCAAGTTGTCATGAGTCCTTGTGCTGCTTGCAAGATTTTGAGAAGAAGATGTGCTGAAAAATGTGTGTTGGCACCTTATTTTCCTCCTACTCAACCTTCCAAATTTACCACTGCTCATCGTGTATTTGGTGCTAGCAACATCATTAAGATCTTGCAGGAACTTCCAGAGTCTCAAAGAGCTGATGCAGTGAGTAGCATGGTTTATGAAGCTAGTGCAAGAATTAGAGACCCTGTATATGGATGTGCAGGTGCAATTTGTCACCTCCAAAAGCAAGTTAATGAGCTTCAAGCACAACTAGCTAAGTCACAAGCTGAACTTATTAACATGCAATTGCAACAATCCAATCTACTATCTCTTATTTGCATGGAAATGAAAGAAACTCCAAATGAATCATCACCACAAGAATCATTTGACAATTTCATTTCAAGTCCTAACTACAGCAGTGATTATCAAAATAATCTCAACTTCTTTGAGGAGAACACTAGCCCAAATTCATTGTGGGAGCCTCTTTGGACATGA 615 0.3821 MENEYTNKITNTSISSPLFYNSSTSSQPTLVPQVVMSPCAACKILRRRCAEKCVLAPYFPPTQPSKFTTAHRVFGASNIIKILQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVNELQAQLAKSQAELINMQLQQSNLLSLICMEMKETPNESSPQESFDNFISSPNYSSDYQNNLNFFEENTSPNSLWEPLWT 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04237 204 Coils Coil 124 144 - -
Trre11g04237 204 Pfam Lateral organ boundaries (LOB) domain 38 135 IPR004883 -
Trre11g04237 204 ProSiteProfiles LOB domain profile. 37 138 IPR004883 -
Trre11g04237 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 37 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04237 Trre-Chr11 55063898 55065936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04237 34 204 AS2 family AT2G28500 66.486 1.09e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre11g04237 LOB 1.4e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04237 11 55063898 55065936 Trre11g04237 11 55063898 55065936 ECH
Trre11g04237 11 55063898 55065936 Trre7g01660 7 12701821 12704278 PCT