Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04235 ATGGAGAAGGTTGCAGGCAAAGACGTCTGTGGTGAGGATCCGTCCAAGCTTCCAAAACTGTCGTCGTCGATCCAGGAAGACGTCGGTGGTACCCAATCCTACGTTGATGAAATTAATAACTCTTTCGAAGAATTCGTCAAAAAATATACAAGCCCTCCGTATACGAATCCTCGTAAAATCCAAACTTATGATACCGACCATCCTGATCCTGTCTCTGGTGCTAAAATTTGTAAGGCTTGTCGTAGATACTACTGTGACAGAAATGCTGTTGACTTTCCTGGGGGTAATTGTCCTAGGGGTACTCTTTGGGATCCTAAAAATCGTTTTTTAACGGCTATTCCGGGCATGCTAGTACCTTCCTTCGCGTGGCCTTTTGTGGACGAGATGACTGCTAAGTCCGACGATAAAACTCTTGTGGTAAGCCATATCACACGTGAAATAAGGAAGGAAACTGATTTCCTTGAGCTTTTTGAGCGTTTTGGTGAGGTCAGCAGTGCCAAGCTTGCCCCTCTTGATCCAGAGGGTACCCGTCGTGGGGGATTTGGCTTTGTTACATTCGTCAACAAGGTGGATGCTCAGAAGGCTATGGACACACTCAATGCCTCTCCGCTTGGCCGGGATAATCGCACCCTTGCACTTGATTGGGCCTCAACCTTAAAAAAACAAACCTAA 672 0.4643 MEKVAGKDVCGEDPSKLPKLSSSIQEDVGGTQSYVDEINNSFEEFVKKYTSPPYTNPRKIQTYDTDHPDPVSGAKICKACRRYYCDRNAVDFPGGNCPRGTLWDPKNRFLTAIPGMLVPSFAWPFVDEMTAKSDDKTLVVSHITREIRKETDFLELFERFGEVSSAKLAPLDPEGTRRGGFGFVTFVNKVDAQKAMDTLNASPLGRDNRTLALDWASTLKKQT 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04235 223 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 218 IPR000504 GO:0003723
Trre11g04235 223 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 149 203 IPR000504 GO:0003723
Trre11g04235 223 Gene3D - 126 223 IPR012677 -
Trre11g04235 223 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 131 217 - -
Trre11g04235 223 MobiDBLite consensus disorder prediction 1 28 - -
Trre11g04235 223 SMART rrm1_1 137 214 IPR000504 GO:0003723
Trre11g04235 223 SUPERFAMILY RNA-binding domain, RBD 97 216 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04235 Trre-Chr11 55042517 55043628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04235 73 217 Eukaryotic Initiation Factors Gene Family AT3G11400 28.916 4.69e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04235 - K14573 tpra:123898674 94.7449