Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04229 ATGTTTCCCGGGAAAATGGAACAGTTTATTGATAACTTACCGCCGATGGATCTGATGCGATCGGAGAAGATGACTTTTGTTCAACTAATTATTCCGGCTGAATCTGCTCACCGTGCAATTTCATATTTAGGTGAACTCGGTCTTCTTCAATTCCGAGACTTAAATGCTGACAAAAGCCCTTTCCAGAGAACGTTTGTTAATCAGGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGATTTTTCAAGGATCAAGTCAATAAAGCTGGTCTAATATCGTCTTCTCGTACTCTATTGCAACCGGACATTGACTTGGAGGATTTAGAGGTACATCTTGCTGAGCATGAACATGAGCTAATTGAAATGAACTCCAATAGTGACAAACTTCAGCAATCATATAATGAACTTTTGGAATTCAAGATTGTACTACAAAAGGCATGTGGTTTTCTTATTTCAAGTCATGGGCGTGCTGTTTCAGGCGAGATAGAACTACAAGATAATGTATACTCAAATGATGACTATGCCGATACAGCATCTTTACTTGAACAGGAAATGAGACCCCAACCATCAAATACATCTGGTTTAAGATTTATCAGTGGGATAATTTGTAAATCCAAGGCTCTTAGGTTTGAAAGGATGTTATTCCGTGCTACAAGAGGCAATATGTTTTTCAATCAGGCACCAGCTGGAGAGCAAATCATGGATCCTGTTTCAACTGAGATGATCGAGAAAACAGTATTCGTTGTGTTTTTCTCCGGGGAACAGGCAAGAACAAAGATTCTGAAAATTTGCGAGGCATTTGGTGCGAATTGTTATCCTGTTCCTGAAGATATAAGTAAGCATGGACAAATAACTAGGGAGGTTACTTCACGTCTTACTGACTTAGAGGCAACTTTGGATGCTGGGATTAGGCACCGGAACAAGGCGCTAGCTTCTATTGCAGACCATCTAGCAAAATGGATGGACTTGGTAAGAAGAGAGAAGGCCGTGTATGATACATTGAATATGTTAAATTTTGATGTCACAAAAAAATGTCTTGTTGCAGAGGGATGGTGCCCTATGATTGCAAAAGCACAGATGCAGGAGGTATTGCAACGTGCAACTTTTGATAGCAGTTCTCAAGTTGGCATAATCTTCCATCAAATGGATGCAGTGGAAGCCCCGCCTACATATTTTAAGACCAACACTTTCACAAATCCATATCAGGAAATCGTTGATGCATATGGTGTTGCAAGATACCAAGAAGCAAATCCTGCAGTTTACACAACTGTTGTATTTCCCTTCCTATTTGCTATGATGTTTGGGGACTGGGGTCATGGAATTTGCCTGTTGCTAGGAGCATTGGTTCTTATAGCACGTGAAAACAAGCTCAGTACACAGAAGCTTGGAAGCTTCATGGAGATGCTATTTGGTGGGCGCTATGTGATTCTTTTGATGTCACTATTTTCAATCTATTGTGGGTTAATCTACAATGAGTTCTTTTCTGTTCCTTTTCACATATTTGGTCCATCAGCATTTCGATGCCGTGATACTTCATGCAGGGATGCTTATACTATTGGCTTAGTCAAATACCGAGATCCATACCCATTTGGTGTGGATCCTAGCTGGCGTGGAAGTCGTTCAGAGTTGGCCTTTCTAAACTCTATGAAGATGAAAATGTCCATTCTGTTTGGTGTGGCACATATGAATTTGGGAATTATATTAAGTTATTTCAATGCTCGTTTCTTTGGAAGCTCACTGGATATAAGGTACCAATTTGTGCCACAGATGATTTTCCTCAACAGTCTGTTTGGATATCTTTCCCTTCTCATCATTGTTAAGTGGTGTACTGGCTCTCAAGCAGACCTTTATCATGTGATGATATATATGTTTTTAAGCCCTACGGACGAACTTGGTGAGAATCAGTTGTTCTGGGGCCAAAGACCACTTCAAATTGTGTTATTGCTTTTGGCTTTAATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATACTAAAGAAGCTTCATACCGAGAGATTTCAAGGTCGTAGTTATGGTATTTTGAATACTTCTGAAATGGATCTTGAGGTGGAGCCCGATTCTGCCAGGCAACATCATCATGAAGAATTCAATTTTAGTGAGGTCTTTGTTCACCAAATGATCCACTCCATCGAGTTTGTTTTAGGTTCAGTTTCAAATACGGCATCATATCTTCGACTTTGGGCATTAAGTTTGGCTCACTCGGAACTTTCTACCGTTTTCTATGAGAAAGTGTTGCTTCTTGCTTGGGGGTATGACAATCTCGTCATTAAGTTAGTGGGGCTAACTGTTTTTGCCTTTGCAACGGCCTTTATACTACTTATGATGGAGAGTCTCAGTGCTTTTCTTCATGCCCTGCGACTTCACTGGGTAGAATTTCAAAATAAATTCTACCACGGTGATGGCTACAAGTTCAAGCCCTTCTCATTTGCTTCTTTAACAGAGGATGATGATTGA 2478 0.4023 MFPGKMEQFIDNLPPMDLMRSEKMTFVQLIIPAESAHRAISYLGELGLLQFRDLNADKSPFQRTFVNQVKRCAEMSRKLRFFKDQVNKAGLISSSRTLLQPDIDLEDLEVHLAEHEHELIEMNSNSDKLQQSYNELLEFKIVLQKACGFLISSHGRAVSGEIELQDNVYSNDDYADTASLLEQEMRPQPSNTSGLRFISGIICKSKALRFERMLFRATRGNMFFNQAPAGEQIMDPVSTEMIEKTVFVVFFSGEQARTKILKICEAFGANCYPVPEDISKHGQITREVTSRLTDLEATLDAGIRHRNKALASIADHLAKWMDLVRREKAVYDTLNMLNFDVTKKCLVAEGWCPMIAKAQMQEVLQRATFDSSSQVGIIFHQMDAVEAPPTYFKTNTFTNPYQEIVDAYGVARYQEANPAVYTTVVFPFLFAMMFGDWGHGICLLLGALVLIARENKLSTQKLGSFMEMLFGGRYVILLMSLFSIYCGLIYNEFFSVPFHIFGPSAFRCRDTSCRDAYTIGLVKYRDPYPFGVDPSWRGSRSELAFLNSMKMKMSILFGVAHMNLGIILSYFNARFFGSSLDIRYQFVPQMIFLNSLFGYLSLLIIVKWCTGSQADLYHVMIYMFLSPTDELGENQLFWGQRPLQIVLLLLALIAVPWMLFPKPFILKKLHTERFQGRSYGILNTSEMDLEVEPDSARQHHHEEFNFSEVFVHQMIHSIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIKLVGLTVFAFATAFILLMMESLSAFLHALRLHWVEFQNKFYHGDGYKFKPFSFASLTEDDD 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04229 825 Pfam V-type ATPase 116kDa subunit family 42 817 IPR002490 GO:0033179|GO:0046961|GO:1902600
Trre11g04229 825 Coils Coil 105 132 - -
Trre11g04229 825 PIRSF ATP6V0A1 14 825 IPR026028 GO:0000220|GO:0046961
Trre11g04229 825 PANTHER VACUOLAR PROTON ATPASES 18 824 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04229 Trre-Chr11 54967950 54977770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04229 6 818 Primary Pumps ATPases(2) AT2G28520 80.368 0.0 1361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04229 K02154 - gmx:100776037 1503.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04229 11 54967950 54977770 Trre11g04229 11 54967950 54977770 ECH
Trre11g04229 11 54967950 54977770 Trre7g01671 7 12834353 12843613 PCT