Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04223 ATGTTAGATCTTAATCTCGATTCATCTCAGAACGATGACTCGATCATGATGATGGAAAAACTTCCAGAAGCTTCTTCAGGAACTTCGAATTCATCAATCGTGAATGCGGAGGGGTCAAGTAACGTTACCGGAGACGAAGACTCGTGTTCAACACGCGCTGGTGATGTTTTCACTTTTAACTTCGGTATATTGAAGGTTGAAAGTGGAAACGAAGTTGTTGCAACGAAAGAGCTTTTTCCGGCGAGTTCGGGGAATTGGCCGGGAGAGTGTTCGACGATGCTGATTCCGGCGAAGAAGAGTATGATGGATCTCTCAATGGATCATAATCGTGGAGTTGAAAATGGAGTTGTTCAGGTTCAACAACGACCTCAGGTGAAGAAGAGTAGGAGAGGACCAAGGTCTCGAAGCTCTCAGTACAGAGGAGTCACGTTCTACAGAAGAACCGGAAGATGGGAATCGCATATCTGGGATTGTGGGAAGCAAGTTTATTTGGGTGGATTTGACACTGCACATGCTGCTGCCAGAGCTTATGATCGAGCTGCTATAAAGTTTAGGGGACTTGATGCTGACATTAATTTCAATCTAGTTGAGTATGAGGAAGATATGAATCAGATGAAGAATCTTTCAAAGGAGGAATTTGTGCATATACTACGTCGCCACAGTAATGGTTTCTCAAGGGGGAGTTCAAAATACAGAGGAGTAACACTTCACAAATGTGGTCGTTGGGAAGCTAGAATGGGACAACTCCTTGGCAAAAAGGCTTATGACAAAGCAGCTCTAAAATGCAATGGAAGAGAGGCAGTGACTAACTTTGACCCAAGTACATATGAAAATGAGGTGAAACAAGAAGGTGGCAGTCACAATCTTGACCTTAATTTAGGCATGGCAACTCCAGGACATGGACTTAAGGAAAACAGAGGGTATAGTCAATTTCAAGCCGTTCCTTACAACCTACATCCTGGAAGGAATTTAAAGATGGAGACCAATGTCAATTCAGTTATTGGTGACCCGTCTTTGAAAAAGTTGGTTGTAACTGAACAGCGTCCTTCCATGTGGAATGCCACGTTTTCTAGTTTCTTTCCCAATGAGGAAAGAGCAGAGAGAATTGGCATTGATCCTTTAAAAGGTCTCCCAAACTGGGCATGGCAAGGGCATAATAGTCAGGGTACTGCTTCCCCAGTACCACAATTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCACCAAATGCCATCTTTCAAACACAATCTATGAACTCAATTCCACAGACACTCTGTTTCACTCCATCCATGGCACCTGGTAGTAGCAATGCATCTCAATACTATTACCATGTGAAGTCCTCACAGGCACCACCATAG 1371 0.4362 MLDLNLDSSQNDDSIMMMEKLPEASSGTSNSSIVNAEGSSNVTGDEDSCSTRAGDVFTFNFGILKVESGNEVVATKELFPASSGNWPGECSTMLIPAKKSMMDLSMDHNRGVENGVVQVQQRPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVEYEEDMNQMKNLSKEEFVHILRRHSNGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKAYDKAALKCNGREAVTNFDPSTYENEVKQEGGSHNLDLNLGMATPGHGLKENRGYSQFQAVPYNLHPGRNLKMETNVNSVIGDPSLKKLVVTEQRPSMWNATFSSFFPNEERAERIGIDPLKGLPNWAWQGHNSQGTASPVPQFSTAASSGFSISATFPPNAIFQTQSMNSIPQTLCFTPSMAPGSSNASQYYYHVKSSQAPP 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04223 456 Gene3D AP2/ERF domain 137 196 IPR036955 GO:0003700|GO:0006355
Trre11g04223 456 Gene3D AP2/ERF domain 229 273 IPR036955 GO:0003700|GO:0006355
Trre11g04223 456 SUPERFAMILY DNA-binding domain 229 273 IPR016177 GO:0003677
Trre11g04223 456 MobiDBLite consensus disorder prediction 23 47 - -
Trre11g04223 456 ProSiteProfiles AP2/ERF domain profile. 138 194 IPR001471 GO:0003700|GO:0006355
Trre11g04223 456 CDD AP2 229 274 IPR001471 GO:0003700|GO:0006355
Trre11g04223 456 SMART rav1_2 138 200 IPR001471 GO:0003700|GO:0006355
Trre11g04223 456 SMART rav1_2 230 278 IPR001471 GO:0003700|GO:0006355
Trre11g04223 456 MobiDBLite consensus disorder prediction 112 138 - -
Trre11g04223 456 SUPERFAMILY DNA-binding domain 137 194 IPR016177 GO:0003677
Trre11g04223 456 Pfam AP2 domain 138 186 IPR001471 GO:0003700|GO:0006355
Trre11g04223 456 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 105 307 - -
Trre11g04223 456 CDD AP2 138 193 IPR001471 GO:0003700|GO:0006355
Trre11g04223 456 MobiDBLite consensus disorder prediction 22 47 - -
Trre11g04223 456 FunFam AP2-like ethylene-responsive transcription factor 137 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04223 Trre-Chr11 54915891 54919582 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04223 1 415 AP2-EREBP Transcription Factor Family AT5G60120 45.695 6.66e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre11g04223 AP2 2.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04223 K09284 - gmx:100777102 665.996