LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre11g04221	ATGTTAGATCTTAATCTCGATTCATCTCAGAACGATGACTCGATCATGATGATGGAAAAACTTCCAGAAGCTTCTTCAGGAACTTCGAATTCATCAATCGTGAATGCGGAGGGGTCAAGTAACGTTACCGGAGACGAAGACTCGTGTTCAACACGCGCTGGTGATGTTTTCACTTTTAACTTCGGTATATTGAAGGTTGAAAGTGGAAACGAAGTTGTTGCAACGAAAGAGCTTTTTCCGGCGAGTTCGGGGAATTGGCCGGGAGAGTGTTCGACGATGCTGATTCCGGCGAAGAAGAGTATGATGGATCTCTCAATGGATCATAATCGTGGAGTTGAAAATGGAGTTGTTCAGGTTCAACAACGACCTCAGGTGAAGAAGAGTAGGAGAGGACCAAGGTCTCGAAGCTCTCAGTACAGAGGAGTCACGTTCTACAGAAGAACCGGAAGATGGGAATCGCATATCTGGGATTGTGGGAAGCAAGTTTATTTGGGTGGATTTGACACTGCACATGCTGCTGCCAGAGCTTATGATCGAGCTGCTATAAAGTTTAGGGGACTTGATGCTGACATTAATTTCAATCTAGTTGAGTATGAGGAAGATATGAATCAGATGAAGAATCTTTCAAAGGAGGAATTTGTGCATATACTACGTCGCCACAGTAATGGTTTCTCAAGGGGGAGTTCAAAATACAGAGGAGTAACACTTCACAAATGTGGTCGTTGGGAAGCTAGAATGGGACAACTCCTTGGCAAAAAGTATATATATCTTGGATTATTCGACAGTGAAGTAGAAGCTGCAAGGGCTTATGACAAAGCAGCTCTAAAATGCAATGGAAGAGAGGCAGTGACTAACTTTGACCCAAGTACATATGAAAATGAGGTGAAACAAGAAGGTATTAATGAAGGTGGCAGTCACAATCTTGACCTTAATTTAGGCATGGCAACTCCAGGACATGGACTTAAGGAAAACAGAGGGTATAGTCAATTTCAAGCCGTTCCTTACAACCTACATCCTGGAAGGAATTTAAAGATGGAGACCAATGTCAATTCAGTTATTGGTGACCCGTCTTTGAAAAAGTTGGTTGTAACTGAACAGCGTCCTTCCATGTGGAATGCCACGTTTTCTAGTTTCTTTCCCAATGAGGAAAGAGCAGAGAGAATTGGCATTGATCCTTTAAAAGGTCTCCCAAACTGGGCATGGCAAGGGCATAATAGTCAGGGTACTGCTTCCCCAGTACCACAATTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCACCAAATGCCATCTTTCAAACACAATCTATGAACTCAATTCCACAGACACTCTGTTTCACTCCATCCATGGCACCTGGTAGTAGCAATGCATCTCAATACTATTACCATGTGAAGTCCTCACAGGCACCACCATAG	1428	0.4321	MLDLNLDSSQNDDSIMMMEKLPEASSGTSNSSIVNAEGSSNVTGDEDSCSTRAGDVFTFNFGILKVESGNEVVATKELFPASSGNWPGECSTMLIPAKKSMMDLSMDHNRGVENGVVQVQQRPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVEYEEDMNQMKNLSKEEFVHILRRHSNGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAALKCNGREAVTNFDPSTYENEVKQEGINEGGSHNLDLNLGMATPGHGLKENRGYSQFQAVPYNLHPGRNLKMETNVNSVIGDPSLKKLVVTEQRPSMWNATFSSFFPNEERAERIGIDPLKGLPNWAWQGHNSQGTASPVPQFSTAASSGFSISATFPPNAIFQTQSMNSIPQTLCFTPSMAPGSSNASQYYYHVKSSQAPP	475

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Trre11g04221	475	SMART	rav1_2	230	293	IPR001471	GO:0003700\|GO:0006355
Trre11g04221	475	SMART	rav1_2	138	200	IPR001471	GO:0003700\|GO:0006355
Trre11g04221	475	Gene3D	AP2/ERF domain	229	288	IPR036955	GO:0003700\|GO:0006355
Trre11g04221	475	Gene3D	AP2/ERF domain	137	196	IPR036955	GO:0003700\|GO:0006355
Trre11g04221	475	MobiDBLite	consensus disorder prediction	23	47	-	-
Trre11g04221	475	FunFam	AP2-like ethylene-responsive transcription factor	137	196	-	-
Trre11g04221	475	ProSiteProfiles	AP2/ERF domain profile.	138	194	IPR001471	GO:0003700\|GO:0006355
Trre11g04221	475	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	105	322	-	-
Trre11g04221	475	SUPERFAMILY	DNA-binding domain	137	194	IPR016177	GO:0003677
Trre11g04221	475	ProSiteProfiles	AP2/ERF domain profile.	230	287	IPR001471	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre11g04221	Trre-Chr11	54915891	54919582	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre11g04221	70	313	AP2-EREBP Transcription Factor Family	AT4G36920	65.613	2.28e-93	288

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Trre11g04221		AP2	2.1e-09	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre11g04221	K09284		-	gmx:100777102	716.072

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