Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04220 ATGTTAGATCTTAATCTCGATTCATCTCAGAACGATGACTCGATCATGATGATGGAAAAACTTCCAGAAGCTTCTTCAGGAACTTCGAATTCATCAATCGTGAATGCGGAGGGGTCAAGTAACGTTACCGGAGACGAAGACTCGTGTTCAACACGCGCTGGTGATGTTTTCACTTTTAACTTCGGTATATTGAAGGTTGAAAGTGGAAACGAAGTTGTTGCAACGAAAGAGCTTTTTCCGGCGAGTTCGGGGAATTGGCCGGGAGAGTGTTCGACGATGCTGATTCCGGCGAAGAAGAGTATGATGGATCTCTCAATGGATCATAATCGTGGAGTTGAAAATGGAGTTGTTCAGGTTCAACAACGACCTCAGGTGAAGAAGAGTAGGAGAGGACCAAGGTCTCGAAGCTCTCAGTACAGAGGAGTCACGTTCTACAGAAGAACCGGAAGATGGGAATCGCATATCTGGGATTGTGGGAAGCAAGTTTATTTGGGTGGATTTGACACTGCACATGCTGCTGCCAGAGCTTATGATCGAGCTGCTATAAAGTTTAGGGGACTTGATGCTGACATTAATTTCAATCTAGTTGAGTATGAGGAAGATATGAATCAGATGAAGAATCTTTCAAAGGAGGAATTTGTGCATATACTACGTCGCCACAGTAATGGTTTCTCAAGGGGGAGTTCAAAATACAGAGGAGTAACACTTCACAAATGTGGTCGTTGGGAAGCTAGAATGGGACAACTCCTTGGCAAAAAGTATATATATCTTGGATTATTCGACAGTGAAGTAGAAGCTGCAAGGGCTTATGACAAAGCAGCTCTAAAATGCAATGGAAGAGAGGCAGTGACTAACTTTGACCCAAGTACATATGAAAATGAGGTGAAACAAGAAGGTATTAATGAAGGTGGCAGTCACAATCTTGACCTTAATTTAGGCATGGCAACTCCAGGACATGGACTTAAGGAAAACAGAGGGTATAGTCAATTTCAAGCCGTTCCTTACAACCTACATCCTGGAAGGAATTTAAAGATGGAGACCAATGTCAATTCAGTTATTGGTGACCCGTCTTTGAAAAAGTTGGTTGTAACTGAACAGCGTCCTTCCATGTGGAATGCCACGTTTTCTAGTTTCTTTCCCAATGAGCAGGAAAGAGCAGAGAGAATTGGCATTGATCCTTTAAAAGGTCTCCCAAACTGGGCATGGCAAGGGCATAATAGTCAGGGTACTGCTTCCCCAGTACCACAATTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCACCAAATGCCATCTTTCAAACACAATCTATGAACTCAATTCCACAGACACTCTGTTTCACTCCATCCATGGCACCTGGTAGTAGCAATGCATCTCAATACTATTACCATGTGAAGTCCTCACAGGCACCACCATAG 1431 0.4326 MLDLNLDSSQNDDSIMMMEKLPEASSGTSNSSIVNAEGSSNVTGDEDSCSTRAGDVFTFNFGILKVESGNEVVATKELFPASSGNWPGECSTMLIPAKKSMMDLSMDHNRGVENGVVQVQQRPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVEYEEDMNQMKNLSKEEFVHILRRHSNGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAALKCNGREAVTNFDPSTYENEVKQEGINEGGSHNLDLNLGMATPGHGLKENRGYSQFQAVPYNLHPGRNLKMETNVNSVIGDPSLKKLVVTEQRPSMWNATFSSFFPNEQERAERIGIDPLKGLPNWAWQGHNSQGTASPVPQFSTAASSGFSISATFPPNAIFQTQSMNSIPQTLCFTPSMAPGSSNASQYYYHVKSSQAPP 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04220 476 SMART rav1_2 230 293 IPR001471 GO:0003700|GO:0006355
Trre11g04220 476 SMART rav1_2 138 200 IPR001471 GO:0003700|GO:0006355
Trre11g04220 476 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 105 323 - -
Trre11g04220 476 Gene3D AP2/ERF domain 137 196 IPR036955 GO:0003700|GO:0006355
Trre11g04220 476 Gene3D AP2/ERF domain 229 288 IPR036955 GO:0003700|GO:0006355
Trre11g04220 476 MobiDBLite consensus disorder prediction 23 47 - -
Trre11g04220 476 FunFam AP2-like ethylene-responsive transcription factor 137 196 - -
Trre11g04220 476 ProSiteProfiles AP2/ERF domain profile. 138 194 IPR001471 GO:0003700|GO:0006355
Trre11g04220 476 SUPERFAMILY DNA-binding domain 137 194 IPR016177 GO:0003677
Trre11g04220 476 ProSiteProfiles AP2/ERF domain profile. 230 287 IPR001471 GO:0003700|GO:0006355
Trre11g04220 476 MobiDBLite consensus disorder prediction 112 138 - -
Trre11g04220 476 Pfam AP2 domain 138 186 IPR001471 GO:0003700|GO:0006355
Trre11g04220 476 Pfam AP2 domain 229 279 IPR001471 GO:0003700|GO:0006355
Trre11g04220 476 CDD AP2 229 289 IPR001471 GO:0003700|GO:0006355
Trre11g04220 476 SUPERFAMILY DNA-binding domain 229 288 IPR016177 GO:0003677
Trre11g04220 476 CDD AP2 138 193 IPR001471 GO:0003700|GO:0006355
Trre11g04220 476 PRINTS Ethylene responsive element binding protein signature 269 289 IPR001471 GO:0003700|GO:0006355
Trre11g04220 476 PRINTS Ethylene responsive element binding protein signature 231 242 IPR001471 GO:0003700|GO:0006355
Trre11g04220 476 MobiDBLite consensus disorder prediction 22 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04220 Trre-Chr11 54915891 54919582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04220 70 313 AP2-EREBP Transcription Factor Family AT4G36920 65.613 2.23e-93 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Trre11g04220 AP2 2.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04220 K09284 - gmx:100777102 711.835