Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre11g04220 | ATGTTAGATCTTAATCTCGATTCATCTCAGAACGATGACTCGATCATGATGATGGAAAAACTTCCAGAAGCTTCTTCAGGAACTTCGAATTCATCAATCGTGAATGCGGAGGGGTCAAGTAACGTTACCGGAGACGAAGACTCGTGTTCAACACGCGCTGGTGATGTTTTCACTTTTAACTTCGGTATATTGAAGGTTGAAAGTGGAAACGAAGTTGTTGCAACGAAAGAGCTTTTTCCGGCGAGTTCGGGGAATTGGCCGGGAGAGTGTTCGACGATGCTGATTCCGGCGAAGAAGAGTATGATGGATCTCTCAATGGATCATAATCGTGGAGTTGAAAATGGAGTTGTTCAGGTTCAACAACGACCTCAGGTGAAGAAGAGTAGGAGAGGACCAAGGTCTCGAAGCTCTCAGTACAGAGGAGTCACGTTCTACAGAAGAACCGGAAGATGGGAATCGCATATCTGGGATTGTGGGAAGCAAGTTTATTTGGGTGGATTTGACACTGCACATGCTGCTGCCAGAGCTTATGATCGAGCTGCTATAAAGTTTAGGGGACTTGATGCTGACATTAATTTCAATCTAGTTGAGTATGAGGAAGATATGAATCAGATGAAGAATCTTTCAAAGGAGGAATTTGTGCATATACTACGTCGCCACAGTAATGGTTTCTCAAGGGGGAGTTCAAAATACAGAGGAGTAACACTTCACAAATGTGGTCGTTGGGAAGCTAGAATGGGACAACTCCTTGGCAAAAAGTATATATATCTTGGATTATTCGACAGTGAAGTAGAAGCTGCAAGGGCTTATGACAAAGCAGCTCTAAAATGCAATGGAAGAGAGGCAGTGACTAACTTTGACCCAAGTACATATGAAAATGAGGTGAAACAAGAAGGTATTAATGAAGGTGGCAGTCACAATCTTGACCTTAATTTAGGCATGGCAACTCCAGGACATGGACTTAAGGAAAACAGAGGGTATAGTCAATTTCAAGCCGTTCCTTACAACCTACATCCTGGAAGGAATTTAAAGATGGAGACCAATGTCAATTCAGTTATTGGTGACCCGTCTTTGAAAAAGTTGGTTGTAACTGAACAGCGTCCTTCCATGTGGAATGCCACGTTTTCTAGTTTCTTTCCCAATGAGCAGGAAAGAGCAGAGAGAATTGGCATTGATCCTTTAAAAGGTCTCCCAAACTGGGCATGGCAAGGGCATAATAGTCAGGGTACTGCTTCCCCAGTACCACAATTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCACCAAATGCCATCTTTCAAACACAATCTATGAACTCAATTCCACAGACACTCTGTTTCACTCCATCCATGGCACCTGGTAGTAGCAATGCATCTCAATACTATTACCATGTGAAGTCCTCACAGGCACCACCATAG | 1431 | 0.4326 | MLDLNLDSSQNDDSIMMMEKLPEASSGTSNSSIVNAEGSSNVTGDEDSCSTRAGDVFTFNFGILKVESGNEVVATKELFPASSGNWPGECSTMLIPAKKSMMDLSMDHNRGVENGVVQVQQRPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVEYEEDMNQMKNLSKEEFVHILRRHSNGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAALKCNGREAVTNFDPSTYENEVKQEGINEGGSHNLDLNLGMATPGHGLKENRGYSQFQAVPYNLHPGRNLKMETNVNSVIGDPSLKKLVVTEQRPSMWNATFSSFFPNEQERAERIGIDPLKGLPNWAWQGHNSQGTASPVPQFSTAASSGFSISATFPPNAIFQTQSMNSIPQTLCFTPSMAPGSSNASQYYYHVKSSQAPP | 476 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre11g04220 | 476 | SMART | rav1_2 | 230 | 293 | IPR001471 | GO:0003700|GO:0006355 | |
Trre11g04220 | 476 | SMART | rav1_2 | 138 | 200 | IPR001471 | GO:0003700|GO:0006355 | |
Trre11g04220 | 476 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 105 | 323 | - | - | |
Trre11g04220 | 476 | Gene3D | AP2/ERF domain | 137 | 196 | IPR036955 | GO:0003700|GO:0006355 | |
Trre11g04220 | 476 | Gene3D | AP2/ERF domain | 229 | 288 | IPR036955 | GO:0003700|GO:0006355 | |
Trre11g04220 | 476 | MobiDBLite | consensus disorder prediction | 23 | 47 | - | - | |
Trre11g04220 | 476 | FunFam | AP2-like ethylene-responsive transcription factor | 137 | 196 | - | - | |
Trre11g04220 | 476 | ProSiteProfiles | AP2/ERF domain profile. | 138 | 194 | IPR001471 | GO:0003700|GO:0006355 | |
Trre11g04220 | 476 | SUPERFAMILY | DNA-binding domain | 137 | 194 | IPR016177 | GO:0003677 | |
Trre11g04220 | 476 | ProSiteProfiles | AP2/ERF domain profile. | 230 | 287 | IPR001471 | GO:0003700|GO:0006355 | |
Trre11g04220 | 476 | MobiDBLite | consensus disorder prediction | 112 | 138 | - | - | |
Trre11g04220 | 476 | Pfam | AP2 domain | 138 | 186 | IPR001471 | GO:0003700|GO:0006355 | |
Trre11g04220 | 476 | Pfam | AP2 domain | 229 | 279 | IPR001471 | GO:0003700|GO:0006355 | |
Trre11g04220 | 476 | CDD | AP2 | 229 | 289 | IPR001471 | GO:0003700|GO:0006355 | |
Trre11g04220 | 476 | SUPERFAMILY | DNA-binding domain | 229 | 288 | IPR016177 | GO:0003677 | |
Trre11g04220 | 476 | CDD | AP2 | 138 | 193 | IPR001471 | GO:0003700|GO:0006355 | |
Trre11g04220 | 476 | PRINTS | Ethylene responsive element binding protein signature | 269 | 289 | IPR001471 | GO:0003700|GO:0006355 | |
Trre11g04220 | 476 | PRINTS | Ethylene responsive element binding protein signature | 231 | 242 | IPR001471 | GO:0003700|GO:0006355 | |
Trre11g04220 | 476 | MobiDBLite | consensus disorder prediction | 22 | 47 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre11g04220 | Trre-Chr11 | 54915891 | 54919582 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre11g04220 | 70 | 313 | AP2-EREBP Transcription Factor Family | AT4G36920 | 65.613 | 2.23e-93 | 288 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-AP2 | Trre11g04220 | AP2 | 2.1e-09 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre11g04220 | K09284 | - | gmx:100777102 | 711.835 |