Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04208 ATGTTAAAAAAAAGAAGCAAAAACCTCTCAAAAACTATTCCAAAACCCCAAATCACGAAATCAACTTCAAATCGATCAATTTCTTCACCATTTTGCTCAAAAACAACTTCAAACATCATCGACGACGAGCTGTCAAATTTCCATATTGATAGTCATGATGAAAGGTCCACCATATATTCTTTTCAGCGGGACCAAGTAACATCACAAAAGGCAATGTCATTACCATCTTCACCCCATGACTATAGAGGTCAAGCTTCTATGCGAAGCGAGCGATCAAGATATGGAGTTAATGATGAACTGGAGTCGACCTGGAATAAAGTAATTGGATCTCAAACGTTCAATAACAAACCTTTATTGCCATATGAAGCATGGAATATTGAACTCATTATTAACTGTTGGAACCCGTTTAGGGATCGAAAGAGAGCTCTTAGCACAAGAAGTGCACAAGAGAAAACTCTCACGGAACCGTACAAAAACTCACCTAGAGCAAGGGTAGAAATTAACAAACCACTGCCACAAGCACCAGGCGAGCAAAACAGAACCGAAAAAAGAAAAATACAAGAAGGCTACACTAGAAAAACAGAGACAAAACAGCAGCACTATTTCTTGTTAATACATAACATCGGGATTGTTCACTGTGATTTGAAAAGTGCAAATTGTCTAGTGAACAAACATTGGACCGTGAAAATCTGTGATTTGGGGCTTTCAAGAATAATGTTAGATCCTCCAATCAGAGATTCTTCGTCGGCTGGAACTCCAGAATGGATGGCCCCTGAACTCATCCAAAATGAACCATTCGATGAAAAATGTGATATCTTTAGCTTTGGTGTGATGATGTGGGAGCTGTGGACCTTGAACAGACCATGGGAAGGCGTACCTGCCGAGAGGGTAGTTTATTCTGTTGCTCATGTGGGTTCCAGATTGAGATTCCCAAAGGCCCGCTTGGCAGTCTGA 954 0.4057 MLKKRSKNLSKTIPKPQITKSTSNRSISSPFCSKTTSNIIDDELSNFHIDSHDERSTIYSFQRDQVTSQKAMSLPSSPHDYRGQASMRSERSRYGVNDELESTWNKVIGSQTFNNKPLLPYEAWNIELIINCWNPFRDRKRALSTRSAQEKTLTEPYKNSPRARVEINKPLPQAPGEQNRTEKRKIQEGYTRKTETKQQHYFLLIHNIGIVHCDLKSANCLVNKHWTVKICDLGLSRIMLDPPIRDSSSAGTPEWMAPELIQNEPFDEKCDIFSFGVMMWELWTLNRPWEGVPAERVVYSVAHVGSRLRFPKARLAV 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04208 317 SMART serkin_6 113 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04208 317 MobiDBLite consensus disorder prediction 67 90 - -
Trre11g04208 317 Pfam Protein kinase domain 204 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04208 317 SUPERFAMILY Protein kinase-like (PK-like) 205 311 IPR011009 -
Trre11g04208 317 MobiDBLite consensus disorder prediction 144 190 - -
Trre11g04208 317 MobiDBLite consensus disorder prediction 67 83 - -
Trre11g04208 317 MobiDBLite consensus disorder prediction 1 31 - -
Trre11g04208 317 MobiDBLite consensus disorder prediction 11 31 - -
Trre11g04208 317 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Trre11g04208 317 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 206 312 - -
Trre11g04208 317 ProSiteProfiles Protein kinase domain profile. 1 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04208 317 Gene3D Transferase(Phosphotransferase) domain 1 202 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04208 Trre-Chr11 54837964 54840622 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04208 202 316 MAP Kinase Kinase Kinase AT2G31010 70.435 2.49e-52 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Trre11g04208 Pkinase 3.8e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04208 - - hsyr:120147729 253.062