Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04206 ATGAACTCCGTCACCGGAACTCAACCTTCTCCGTCCACCGTACTCGATGACGGCTGGTCCGAAGAAGCTACGTTCACACTCATCGACGCTTGGGGAAAACTTTACCAGAAGGTTAACCGCAAATACTTGCGTCAGTATCACTGGAAAGAAATCGCGAAAGCCGTTAACGACCACCACGGTTACAGTCGAAAATCTCGCCGCACTTACGTTCAATGTAAGAATCGAATTGACGCTCTGAAGAAGAAGTGCGCAATCGAGAAAGCTAGGGTTTCTGAAAACGGTTTTTACCATAACGATGATGATGAATTTCCTTATTTCGATAAACTTGATTCGGTAATTGGTGATACGTCACCGACGAAGAAGCTTTTGCAGCTGTCTGAACCTACTGTGAATGTTCCGGCATGGGCACTTGCACCGGTCGGTCTTCGATCTGGTGCTCAGAGTACTCAGAAGCAACCTGTAATGGCGGAGGAGGGGTGTGTGGAGGAGGAATCACGTTTTCGCCGGAATTTATCTGCATTTGCTGCAGAGGCTGCTGCAGCAGCGGAAGCAGAGATTGATAATTCAGATTCTGATGATTCATATTTTGATAATTCAGATGGTTCAGAGTTGAGCAATGAGAATAGGAAGAGGAAGAGAGGAAGAAAGGATGTGGAATTTGGGTATAGAGAGGTTGCAGGAAGAAAAGGAAGAAATGATAGGGAATTTGGGAGTAGAGAGGTTGCCAATGTTATGGAGAAATTTGGCGAGGTACATGAGAGATTCGAGTCATCGAAGCAGCGAAGAAATGTTAATGAGAAGTTTAGTGAGATACACGAGAGAGTGGAATCATCGAAGCAGCGAAGAAATGTTGATTCGGAGAAACGGAATATGCAATTTCAAAAGGATTGTCAGAGGCTGCTGCAGTTGCAAAAAACCAACCACTCAAAGGAAATGGAAAGAACAGCTTCAATGAATGACCGAAATGAACAAATGTTAAACGTTAGAAATCTACCAGTTCCTACCCAAAACAGCAAAGTCAGTATTTTGACGGATGATTGGGACTCCGTAGATCAGAGCGTGAAGGATGAAGTTTGGAAAGATATCTTGAAAGTATGGGATGTTCCTAATTCTGGGTTCTTACGAAAGAAATGGGTTGCATATGCGGGCGTTTGTTCAGATACGACTGGATCCTTCTTTCCAGGAGATTAG 1191 0.4416 MNSVTGTQPSPSTVLDDGWSEEATFTLIDAWGKLYQKVNRKYLRQYHWKEIAKAVNDHHGYSRKSRRTYVQCKNRIDALKKKCAIEKARVSENGFYHNDDDEFPYFDKLDSVIGDTSPTKKLLQLSEPTVNVPAWALAPVGLRSGAQSTQKQPVMAEEGCVEEESRFRRNLSAFAAEAAAAAEAEIDNSDSDDSYFDNSDGSELSNENRKRKRGRKDVEFGYREVAGRKGRNDREFGSREVANVMEKFGEVHERFESSKQRRNVNEKFSEIHERVESSKQRRNVDSEKRNMQFQKDCQRLLQLQKTNHSKEMERTASMNDRNEQMLNVRNLPVPTQNSKVSILTDDWDSVDQSVKDEVWKDILKVWDVPNSGFLRKKWVAYAGVCSDTTGSFFPGD 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04206 396 Pfam Myb/SANT-like DNA-binding domain 17 111 IPR044822 -
Trre11g04206 396 Gene3D - 19 83 - -
Trre11g04206 396 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 16 261 IPR044823 -
Trre11g04206 396 MobiDBLite consensus disorder prediction 184 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04206 Trre-Chr11 54828738 54832061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04206 8 148 Trihelix Transcription Factor Family AT3G14180 38.462 1.69e-21 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre11g04206 Myb_DNA-bind_4 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04206 - - tpra:123893969 504.212