Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04176 ATGGATGATTTTTTTGCAACTAGAATTAATGATGGTTGTTTTCAAAGTATAATGGGAAGTGGGTATGGTTCATCTTCTTCTTCTTCTCTTGTTTTGGATAGAGAAAGAGGAGAGCTTGTGGAAGCTGCTGTGAAATTGGAACGAAAAGGTGTTTCACCTGAGAGAAGTATTGAAGCTTTGAAGAATCATAGTGAAGCTGAGAGAAGAAGAAGAGCAAGAATTAATTCACATCTTGATACTCTTCGTAGTGTTATTCCTGGTGCTAATAAGTTGGACAAAGCATCCTTACTAGCTGAAGTTATTACACATTTGAAAGAACTGAAAACAAATGCAGCACAAGCAAGTGAAGGATTAATGATACCAAAAGACAATGATGAGATAAGAGTTGAATCGCAAGAAGGTGGATTAAATGGTTTCCCTTATTCAATTAGAGCATCGCTATGCTGCGATTACAAACCAGGTTTATTGTCTGATATAAGACAAGCACTTGATGCACTTCAGCTTATGATTATAAGGGCAGAGATTGCAACTTTAGAAGGTAGAATGAAGAATGTCTTTGTTATAATTAGTTGCAAAGAACAGATGTTCGAAGATGCTGAGTATCGACAGTTTCTTGCTGGATCGGTTCATCAAGCTCTTAGATCTGTACTTGATAGATTTTCTGTTTCACAAAATGTTTTAGAAACTAGAAAGAGAAGAAGGATTTCTATATTCAGTTCTTCATCTTTAGGAGATTTCTTATAA 744 0.3548 MDDFFATRINDGCFQSIMGSGYGSSSSSSLVLDRERGELVEAAVKLERKGVSPERSIEALKNHSEAERRRRARINSHLDTLRSVIPGANKLDKASLLAEVITHLKELKTNAAQASEGLMIPKDNDEIRVESQEGGLNGFPYSIRASLCCDYKPGLLSDIRQALDALQLMIIRAEIATLEGRMKNVFVIISCKEQMFEDAEYRQFLAGSVHQALRSVLDRFSVSQNVLETRKRRRISIFSSSSLGDFL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04176 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 59 116 IPR036638 GO:0046983
Trre11g04176 247 SMART finulus 64 113 IPR011598 GO:0046983
Trre11g04176 247 PANTHER TRANSCRIPTION FACTOR BHLH30 24 239 IPR045847 GO:0003700|GO:0006355
Trre11g04176 247 CDD ACT_UUR-ACR-like 146 188 - -
Trre11g04176 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 58 107 IPR011598 GO:0046983
Trre11g04176 247 Gene3D - 54 116 IPR036638 GO:0046983
Trre11g04176 247 Pfam Helix-loop-helix DNA-binding domain 62 107 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04176 Trre-Chr11 54607278 54609185 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04176 45 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 39.286 7.38e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre11g04176 HLH 3.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04176 - - lja:Lj3g3v2848980.1 368.237