Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04175 ATGAAAATGGATGATTTTTTTGCAACTAGAATTAATGATGGTTGTTTTCAAAGTATAATGGGAAGTGGGTATGGTTCATCTTCTTCTTCTTCTCTTGTTTTGGATAGAGAAAGAGGAGAGCTTGTGGAAGCTGCTGTGAAATTGGAACGAAAAGGTGTTTCACCTGAGAGAAGTATTGAAGCTTTGAAGAATCATAGTGAAGCTGAGAGAAGAAGAAGAGCAAGAATTAATTCACATCTTGATACTCTTCGTAGTGTTATTCCTGGTGCTAATAAGTTGGACAAAGCATCCTTACTAGCTGAAGTTATTACACATTTGAAAGAACTGAAAACAAATGCAGCACAAGCAAGTGAAGGATTAATGATACCAAAAGACAATGATGAGATAAGAGTTGAATCGCAAGAAGGTGGATTAAATGGTTTCCCTTATTCAATTAGAGCATCGCTATGCTGCGATTACAAACCAGGTTTATTGTCTGATATAAGACAAGCACTTGATGCACTTCAGCTTATGATTATAAGGGCAGAGATTGCAACTTTAGAAGGTAGAATGAAGAATGTCTTTGTTATAATTAGTTGCAAAGAACAGATGTTCGAAGATGCTGAGTATCGACAGTTTCTTGCTGGATCGGTTCATCAAGCTCTTAGATCTGTACTTGATAGATTTTCTGTTTCACAAAATGTTTTAGAAACTAGAAAGAGAAGAAGGATTTCTATATTCAGTTCTTCATCTTTAGGAGATTTCTTATAA 750 0.3533 MKMDDFFATRINDGCFQSIMGSGYGSSSSSSLVLDRERGELVEAAVKLERKGVSPERSIEALKNHSEAERRRRARINSHLDTLRSVIPGANKLDKASLLAEVITHLKELKTNAAQASEGLMIPKDNDEIRVESQEGGLNGFPYSIRASLCCDYKPGLLSDIRQALDALQLMIIRAEIATLEGRMKNVFVIISCKEQMFEDAEYRQFLAGSVHQALRSVLDRFSVSQNVLETRKRRRISIFSSSSLGDFL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04175 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 109 IPR011598 GO:0046983
Trre11g04175 249 SMART finulus 66 115 IPR011598 GO:0046983
Trre11g04175 249 PANTHER TRANSCRIPTION FACTOR BHLH30 26 241 IPR045847 GO:0003700|GO:0006355
Trre11g04175 249 Pfam Helix-loop-helix DNA-binding domain 64 109 IPR011598 GO:0046983
Trre11g04175 249 Gene3D - 56 118 IPR036638 GO:0046983
Trre11g04175 249 CDD ACT_UUR-ACR-like 148 190 - -
Trre11g04175 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 61 118 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04175 Trre-Chr11 54607278 54609191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04175 23 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 35.443 9.02e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre11g04175 HLH 3.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04175 - - lja:Lj3g3v2848980.1 369.777