Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04159 ATGGGAATGAAGAGCACAGGTGGAGAAATAGTTCAAGTTCAAGGTGGTCACATTGTTAGAGCAACTGGTAGAAAAGATAGACATAGTAAGGTATATACTGCGAAAGGTCCTCGCGATCGGCGCGTTCGTTTATCGGCACATACTGCGATTCAATTCTATGATGTTCAAGATCGTCTCGGTTATGATAGACCGAGTAAAGCCGTTGATTGGCTTATCAAAAAAGCTAAATCTGCTATTGATAAGCTTGATCAACTTCCTCCATGGAATCCAATTCCTAATGCAACAGAAGTGTTGCAAGAAGAAGGAACTAATAATAATGCAGTTGAAACAAATGAAATGGTTATTGCAGCAGAAAATTCAGAATCTTCTGGTTACAATATGCAGCAGAATAATCATAATCATAATCATAATCACAATCACCATAACCATTCAGCTTTCATTCAATCAAGTATTGATAATGATGCTATAGCATTTTTTCCAACAACTTCTGTTGCTGAAACTATGAATTTTCAAAGCTATTCTTCTGATATAATCTCAAGAACAAACAACTCAACACAGGATCTTGGTCTTTCACTTCATTCATTCCAAGATAATTCAGGTTCAAATGATCAAACACTTTTCTCCGAATCAAACCCTGTTGGATTTGATGCTAGTTATCATAGGATTGTGAATTGGAACAATGATCATGGAACAACTGATATGAATAGAACTGGTTTCATGGTTAATTCGCCTGCGTTTTTAGGTCAAGGTTCGGCTTTTTCCGCCCATAGGGGGACCCTTCAGTCCAGTTTTTCGCCATCGCTTCGTCCTTGGAATGATATTCCAATGACGGATTCTTCGGTGGATCATCATAATCACAAGTCTCATTCTCATCAACCAATTCATCAAGCTTCTATCTTTGGTAGCAGGTTTTTGTCTGATGCATTGACAGGTTTCTGTATTCCTGCGCGAATTCAAGGCGACGATGAGAGCCATGGAGTCGGTTCCGAAAGACCATCCTCTTCTTCTAATTCTCATCACTAA 1023 0.3881 MGMKSTGGEIVQVQGGHIVRATGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLDQLPPWNPIPNATEVLQEEGTNNNAVETNEMVIAAENSESSGYNMQQNNHNHNHNHNHHNHSAFIQSSIDNDAIAFFPTTSVAETMNFQSYSSDIISRTNNSTQDLGLSLHSFQDNSGSNDQTLFSESNPVGFDASYHRIVNWNNDHGTTDMNRTGFMVNSPAFLGQGSAFSAHRGTLQSSFSPSLRPWNDIPMTDSSVDHHNHKSHSHQPIHQASIFGSRFLSDALTGFCIPARIQGDDESHGVGSERPSSSSNSHH 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04159 340 Pfam TCP family transcription factor 23 141 IPR017887 -
Trre11g04159 340 MobiDBLite consensus disorder prediction 320 340 - -
Trre11g04159 340 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Trre11g04159 340 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 290 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04159 Trre-Chr11 54404412 54405434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04159 8 337 TCP Transcription Factor Family AT3G15030 40.452 3.47e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre11g04159 TCP 1.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04159 - - gmx:100814907 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04159 11 54404412 54405434 Trre11g04159 11 54404412 54405434 ECH