Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04158 ATGAGTAATTTCAATGATGATAGAAACCATGATGATGATCATAATTATTTTCCATTTGGAAATTTCTATCGTGGATCTAGTCAAAGCAACTTCAACAAAAAAATCTTGTTAACAGCCATAGTTTCTTTAGTACTTGTATTAATTTTGGTCTTTGCTCTACACCTCTATGCAAGGTATGTTCTCAAACGCCAAGCTCGCCGGAGAGCCGCCATTCATCAACTCAGCCTCACCGTCGCTCAAGCTCATACACAACTCACCGAACCAGCTAACGCTGGACTCGACCGAGCCCTCATCGCTACTCTTCCAACTTTCCTCTTCAAAGAGGATGAAGAAATGATGAGGTTGCTTCCGAATTGCAAGCATAGTTTCCACGTGGCTTGCATCGATAAGTGGTTAGCTTCACATTCCACGTGTCCAATTTGTCGAACCAAGGTTGAACCTCGGCTCGAACCAGAGGCACGTGAGGGACCCACTTTGTTCGTACAACCATTAGAAGGTACATCGGATGGTGATGGTGGTGTTAGTGGGTCCCCCAAAAATATTTCACGGTTGAGCTCTTTTCGAAGGATTCTTACTAGAGATAGATCTTCGAGACGAATCCAACCTTCTAATACTCCACGTGATGATGTTATTATTGGTCGTGATTTAGAGAGGCAGTAA 660 0.4333 MSNFNDDRNHDDDHNYFPFGNFYRGSSQSNFNKKILLTAIVSLVLVLILVFALHLYARYVLKRQARRRAAIHQLSLTVAQAHTQLTEPANAGLDRALIATLPTFLFKEDEEMMRLLPNCKHSFHVACIDKWLASHSTCPICRTKVEPRLEPEAREGPTLFVQPLEGTSDGDGGVSGSPKNISRLSSFRRILTRDRSSRRIQPSNTPRDDVIIGRDLERQ 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04158 219 MobiDBLite consensus disorder prediction 194 219 - -
Trre11g04158 219 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 26 152 - -
Trre11g04158 219 ProSiteProfiles Zinc finger RING-type profile. 119 142 IPR001841 -
Trre11g04158 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 149 IPR013083 -
Trre11g04158 219 SUPERFAMILY RING/U-box 107 148 - -
Trre11g04158 219 Pfam RING-H2 zinc finger domain 103 142 IPR024766 GO:0008270
Trre11g04158 219 CDD RING-H2_EL5-like 108 142 - -
Trre11g04158 219 MobiDBLite consensus disorder prediction 152 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04158 Trre-Chr11 54392871 54393605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04158 2 219 C3H Transcription Factor Family AT2G42360 40.964 1.50e-44 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04158 K19038 - gmx:100780265 188.348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04158 11 54392871 54393605 Trre11g04158 11 54392871 54393605 ECH