Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04144 ATGGACAATAGAGATATTTCAAATGGTTTCCTTCATGAAAACACAACAAGTTCATCAAATGAAAATCCTCCTAGTTTAAAGAGAAAAAGAAACCTCCCTGGAAATCCAGATCCTGAAGCAGAAGTGATATCATTATCACCAAAAACATTGATGGCAACAAACAGATTTGTGTGTGAAATTTGTCTAAAAGGTTTTCAAAGGGATCAAAATCTTCAACTTCATCGACGCGGACATAACCTTCCTTGGAAGCTGAAACAAAGAACAAGCAAAGAAATAAGGAAGAGAGTGTATGTGTGTCCAGAGAAGACTTGTGTTCACAATCATCCTTCAAGGGCTTTGGGAGACTTAACTGGGATAAAGAAGCACTTTTGTAGGAAGCACGGTGAGAAAAAGTGGAAGTGTGAGAAGTGCTCAAAGTTTTATGCTGTTCAATCAGATATGAAAGCACATTCAAAAACTTGTGGTACTAGAGAATACAAATGTGACTGTGGCACTATATTTTCAAGGAGGGATAGCTTTGTGACTCATAGAGCTTTCTGTGATGCCTTAGCAGAAGAAACAGCTAGAATAAATGGATCAACCAACTCATTATTAGGAATGGGAGGTAACAACATTGGTAATTACAACATCATGCAAAATTCTCTTATCCCAAACATAGGAGAAACTCATTTTTCTTCAATTTTCAAGCCAAATTCATGCACAAATCAAGAAACAACAAATCAAACCTCAAGATCAGGTTTATCCCTTTGGATGTCTCAAACATCTCATGACACAATATTGGCTAATAATAGCAATATTGGAAACACACCACACTCTAATTATCATCAAAATTGGGTGTTTGGAAATAAATTCTCTTCTAATAATGAATCTCAAGAGTTAACTAGTTCTGTTTCACTTCCACTTGTCAATAACAACAACATTGATAAGGATAGTGCAAATGCAAATGCAAATGCAAATTCAAACAACCTTGTTAGTGTTCCTTCTTTGTATAGCTCACAACATCAATCTCAATCTAATCATCAAATTACAACCTCAGCAAACATGTCAGCAACTGCTTTGTTACAAAAAGCTGCTCAAATTGGGACAACTTCAACTGATTCATTATTCCTTGGAAGTTTAGGATTGAGATGTAATAGTCCAAGTCAAGATCATGGTAACAAATTTTGTGGGGTGTTTACTACTAGTGATCATGGGACAGCAGAGTACTATTCAAGTGAATTGTCACAAATGCCCCCCACAAAACGACGACGTGTGCAGAATGAAGAGAATGTTTGGGGACAAACTAGGGATTTTCTTGGTGTTGGTGGTGCTAACCATTTGCATCCCTTCATCCATCAGCGGATGGATTTGATTTGA 1356 0.368 MDNRDISNGFLHENTTSSSNENPPSLKRKRNLPGNPDPEAEVISLSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQSDMKAHSKTCGTREYKCDCGTIFSRRDSFVTHRAFCDALAEETARINGSTNSLLGMGGNNIGNYNIMQNSLIPNIGETHFSSIFKPNSCTNQETTNQTSRSGLSLWMSQTSHDTILANNSNIGNTPHSNYHQNWVFGNKFSSNNESQELTSSVSLPLVNNNNIDKDSANANANANSNNLVSVPSLYSSQHQSQSNHQITTSANMSATALLQKAAQIGTTSTDSLFLGSLGLRCNSPSQDHGNKFCGVFTTSDHGTAEYYSSELSQMPPTKRRRVQNEENVWGQTRDFLGVGGANHLHPFIHQRMDLI 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04144 451 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Trre11g04144 451 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Trre11g04144 451 Gene3D Classic Zinc Finger 89 180 - -
Trre11g04144 451 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 15 437 IPR031140 -
Trre11g04144 451 SMART c2h2final6 132 152 IPR013087 -
Trre11g04144 451 SMART c2h2final6 97 127 IPR013087 -
Trre11g04144 451 SMART c2h2final6 56 78 IPR013087 -
Trre11g04144 451 MobiDBLite consensus disorder prediction 8 26 - -
Trre11g04144 451 FunFam protein indeterminate-domain 12-like 35 103 - -
Trre11g04144 451 FunFam protein indeterminate-domain 5, chloroplastic-like 110 189 - -
Trre11g04144 451 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
Trre11g04144 451 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04144 Trre-Chr11 54284547 54287635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04144 22 435 IDZ Gene Family AT1G03840 51.931 8.03e-135 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre11g04144 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04144 K25870 - gmx:100778666 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04144 11 54284547 54287635 Trre11g04144 11 54284547 54287635 ECH