Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04136 ATGGCGTCGTTATTCAAGGATCCGGCGAAGATCTCGGCGTATAGAGATAGAAGATTCCCTGGAAATCAAGAAGAGTTTGAGCATGCGTTGATTACTTCAAATACTGTTTATGTTGGTAACATGTCGTTTTACACTACGGAAGAACAAATTTATGAACTATTTTCACGAGCTGGTGAAATTAAGAAGATTATCATGGGTTTGGATAAGAACACTAAAACTCCTTGCGGTTTTTGCTTCGTTTTATATTACTCGCGTGAAGATACTGAGGATGCTTGCAAATATATAAGCGGGACAATACTGGATGATCGCCCTATTCGTGTTGATTTTGACTGGGGATTTCAGGATGGAAGACAATGGGGCCGGGGACGTAGTGGTGGCCAGGTCCGTGATGAATATCGCACTGATTATGATCCAGGTAGAGGTGGATATGGAAAGTTGGTTCAGAAAGAGTTAGAAGTACAGAGGCATCTTGTAGATTATGGCACTGGTTCTTTGGGATCTTTTCCGCCTGTTATTCCTTCTTCTTATGGTAGACATGGTGGTGGCCATGGTCATGGTGGTGGTTATGGTCATGGTGGTTCCCGTCGGCATGGTAGAGATTACCCTAGGAAGAGATACAGAGACGATGATCGCCACCACACACAGGAGCCCTCAAAAAGAGCATCAGATCATGAATCTCGGAGGAACTCTGACCATGAATCTAGACCGGAAAAGAATCCACGATTTCGGGAGAGTGGTGATTCTGATGATGATGAGGAAGATGATCGAAAAAGACGGGGTTAA 783 0.4406 MASLFKDPAKISAYRDRRFPGNQEEFEHALITSNTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRHLVDYGTGSLGSFPPVIPSSYGRHGGGHGHGGGYGHGGSRRHGRDYPRKRYRDDDRHHTQEPSKRASDHESRRNSDHESRPEKNPRFRESGDSDDDEEDDRKRRG 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04136 260 MobiDBLite consensus disorder prediction 120 139 - -
Trre11g04136 260 MobiDBLite consensus disorder prediction 163 260 - -
Trre11g04136 260 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 258 IPR027157 GO:0000339|GO:0005846|GO:0045292
Trre11g04136 260 MobiDBLite consensus disorder prediction 124 138 - -
Trre11g04136 260 CDD RRM_NCBP2 36 113 IPR034148 -
Trre11g04136 260 SUPERFAMILY RNA-binding domain, RBD 22 144 IPR035979 GO:0003676
Trre11g04136 260 MobiDBLite consensus disorder prediction 202 260 - -
Trre11g04136 260 FunFam Nuclear cap-binding protein subunit 2 4 150 - -
Trre11g04136 260 SMART rrm1_1 35 108 IPR000504 GO:0003723
Trre11g04136 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Trre11g04136 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Trre11g04136 260 Gene3D - 6 150 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04136 Trre-Chr11 54202326 54206231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04136 34 109 Eukaryotic Initiation Factors Gene Family AT3G11400 34.211 6.76e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04136 K12883 - gmx:100776217 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04136 11 54202326 54206231 Trre11g04136 11 54202326 54206231 ECH