Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04125 ATGACTACTATTTGTGCTGAACAACAACAACACAAGTTTCATTCTTCTTACCAACCTCTCTCCCCCAAAAAATCTTTAAGAGAAATTGATATCCCACCAAGAAAACTCCTCACCCGCCGTAGCACCACCGCCGCCGACATGTTTTCCGACGATACCATCCTTCAAAAATTCCTTCCACACAATGATTCCGACTCTGATTCTGACGATCCTTACTCGTCCGACCATTTTCGTATGTACGAATTCAAAGTCCGCCGGTGCACTCGTAGCCGGAGCCACGACTGGACTGACTGTCCATTTGCACACCCCGGCGAAAAAGCACGCCGCCGTGATCCACGGCGGTTTCATTATTCAGGATCAGTCTGTCCTGAGTATCGCCGCGGTAGCTGTAACCGCGGCGATTCTTGCGAATTTTCCCATGGCGTTTTTGAATGCTGGCTTCATCCTGCAAGATACAGAACAGAAGCTTGCAAAGATGGTAAAAATTGTAAAAGAAAAGTTTGTTTCTTTGCACACACTCCTCGTCAATTAAGAATCCTTCCGGTAACTTCTTCATCTTCTTCAAATGAACAATTCTCATGCAACAAGAAAAATAACAAGATTTTGAATAACCATGTTGGTTCAAAATCAAACAATTGTTGTTTGTATTGTCATTGTGGTGGTAATGGTAATGGTGCTAATAATTCTCCAACTTCAACACTTTTTGGTATTTCTCATTTTTCTTCACCACCAGCATCACCTCCTATGTCTCCAATGAAGCCAAGAAACACTGTTTCATCTCTCTCACGCTATGGTTCTTCCATTAATAGTAACAATCTTCGTTACAGAGACATGCTTATTGATCTTTTGGGTTCATTTGATGGTATAAATTTCAATGAAGGTTCTTCTTCTTCTTCTTCCCCTGTTTTTGGTGCTAGTGCTAAAGCATTTCAGATACAGAACAACATGAACTTGGGTTATCTTGATATTCCTCTTAACTCTGAGGAACATATTCAGAATCAGAATCAGTTTATTGTACCTTCTTCTTTTGATCAGCAACAGCAACATTTTAATATTCTTTCACCAATTCATCAGAATTTGACATTACCAAGTTTCAATGATGTTGATGACAATAACATGATTAACAACAAAATGATGTTTTTGGGAAATAATGAGAATAATAATAAGGTTGTTGTTGGTGGTGGTGGTGGTGATGCTCCTGATCTTGGATGGGTTAATGAGCTTCTCATGTAG 1230 0.3992 MTTICAEQQQHKFHSSYQPLSPKKSLREIDIPPRKLLTRRSTTAADMFSDDTILQKFLPHNDSDSDSDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGSVCPEYRRGSCNRGDSCEFSHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSSSSSNEQFSCNKKNNKILNNHVGSKSNNCCLYCHCGGNGNGANNSPTSTLFGISHFSSPPASPPMSPMKPRNTVSSLSRYGSSINSNNLRYRDMLIDLLGSFDGINFNEGSSSSSSPVFGASAKAFQIQNNMNLGYLDIPLNSEEHIQNQNQFIVPSSFDQQQQHFNILSPIHQNLTLPSFNDVDDNNMINNKMMFLGNNENNNKVVVGGGGGDAPDLGWVNELLM 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04125 409 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 119 140 IPR000571 GO:0046872
Trre11g04125 409 ProSiteProfiles Zinc finger C3H1-type profile. 116 142 IPR000571 GO:0046872
Trre11g04125 409 Gene3D - 110 188 - -
Trre11g04125 409 PANTHER UNKEMPT FAMILY MEMBER 47 408 IPR045234 -
Trre11g04125 409 SMART c3hfinal6 115 141 IPR000571 GO:0046872
Trre11g04125 409 SMART c3hfinal6 150 173 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04125 Trre-Chr11 54130614 54131843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04125 68 177 C2H2 Transcription Factor Family AT5G07500 68.182 3.86e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre11g04125 zf-CCCH 1.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04125 K23047 - gmx:100801371 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04125 11 54130614 54131843 Trre11g04125 11 54130614 54131843 ECH