Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04123 ATGCCAGCCCAGAAGCGTTCCTTACCTGCTGAGTCAATGGACGATGAAGAAGCTTCACAGCTTGTTCACCATTCTCGCCATGTCAAACATCAACAGAACAACCGCGACCCACACTTCATCGACCAACAACAACAACAACAGCAGAACCAAGTCGAACAAGAGGAAGATGAAGAAGAAGATGATGATGATGATCAGCAAGAGCAAGATGAGGAAGAAGATGAGCAAGGAGAAGAAGAGGAAGATGAAGAAGAGGCTGAAGATGATGAAGATGAAGATGGGCAGCATAATAATGATGACAAAGAAAAATCACAGGATTCCGATGAAGACCCATCTTCTGATGATGAAGAAAAGCCTGAATATGTGTACATAGAACTTGCGAATATTCGTAAAGATGTCCAATGTCCAATTTGCCTCGGTATTATTAAGAAAACAAGAACTGTTATGGAATGCTTGCACCGCTTTTGCAGGGAATGCATTGACAAATCAATGCGACTGGGGAACAATGAATGCCCTGCTTGCCGCACACACTGTGCCAGCCGTCGCTCCTTGAGAGATGATCCAAACTATGATGCCCTTATTGCTGTTTTATATCCAAATATTGAGAAGTACGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAATCGAAATAAGCAGATTCAAGCTTCAATAGCAAAAGTGTTTCAACGGCAATCTGAAGCTCTAGGCAAGAAACGTAAAGATACACTAAGTTCAAGTTCATTTGTGACAAGATCACAGCGTAATCAAAGAAACCTCCAGTCTAGGAGACAAAACCAAGCAACTGATGTTCAAGGATCTGAAAATGAGGAAAATGGCAATAATGAAAGAGACTCGTCTTCCGGCGATGAGCGCGGCACAGAACACCGACAAAGAAAACGAAAGAAATGGACCAGGGTTCGCCCCTCTCAGCCCTCATCATCAATGGCAAGTCCTGATGGTGGAAGCGTAGAAAGTGATACAGATATAAATAGAGAAAATCGAGGAACTTCAAGGCAGGTGACAAAACCTGGAAAGCTGACTTGGGGAAGGGGTGGTTTTCGGAGTAACACAAGATATGGAAGTGGTGGTGGTAGCAACAGCAAAAGTTCTCGCAGTGGTCGAATGTCTAGGTTGGTTGACTATCTCAAAAACTTGGATGAAAACACTGCTGAGTTTGATGTTCATCTCATGTTTATTTCTCCGAACAATGAAACTACACCAAGTTTGGAGAAGCTTCACCTGTCTTGCCGACCAACTTTGTCTGTCAAGAACCTTTATGAATATGTTGCTACTCAGACACCTTTGAAAGCTGAAGAAGTTGAGATACTGGCAGTTAAAGGATGCAGCGGTGTAAATTGTGACAAATCAACTGACGAGTATTCACTCCTCGATTGTGATGAGCTAACATCGCTTGTTATAGATCCACAAAAAGATGAACTGGAAGTTTTGCAAGCTCATGAAACTGTGGCAGAGATTAGATCCAAAAGCATATCTAAAAGAGGCCATTTGATTCTGGCATACAAGAGGAAGGTCTAG 1539 0.4269 MPAQKRSLPAESMDDEEASQLVHHSRHVKHQQNNRDPHFIDQQQQQQQNQVEQEEDEEEDDDDDQQEQDEEEDEQGEEEEDEEEAEDDEDEDGQHNNDDKEKSQDSDEDPSSDDEEKPEYVYIELANIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAVLYPNIEKYEEEELEFREEEKNRNKQIQASIAKVFQRQSEALGKKRKDTLSSSSFVTRSQRNQRNLQSRRQNQATDVQGSENEENGNNERDSSSGDERGTEHRQRKRKKWTRVRPSQPSSSMASPDGGSVESDTDINRENRGTSRQVTKPGKLTWGRGGFRSNTRYGSGGGSNSKSSRSGRMSRLVDYLKNLDENTAEFDVHLMFISPNNETTPSLEKLHLSCRPTLSVKNLYEYVATQTPLKAEEVEILAVKGCSGVNCDKSTDEYSLLDCDELTSLVIDPQKDELEVLQAHETVAEIRSKSISKRGHLILAYKRKV 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04123 512 MobiDBLite consensus disorder prediction 232 375 - -
Trre11g04123 512 MobiDBLite consensus disorder prediction 308 325 - -
Trre11g04123 512 MobiDBLite consensus disorder prediction 359 375 - -
Trre11g04123 512 SMART ring_2 134 173 IPR001841 -
Trre11g04123 512 MobiDBLite consensus disorder prediction 242 276 - -
Trre11g04123 512 SUPERFAMILY RING/U-box 121 188 - -
Trre11g04123 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 197 IPR013083 -
Trre11g04123 512 Coils Coil 200 223 - -
Trre11g04123 512 MobiDBLite consensus disorder prediction 1 117 - -
Trre11g04123 512 Coils Coil 68 91 - -
Trre11g04123 512 Pfam Zinc finger, C3HC4 type (RING finger) 133 173 - -
Trre11g04123 512 ProSiteProfiles Zinc finger RING-type profile. 134 174 IPR001841 -
Trre11g04123 512 PANTHER OS11G0578200 PROTEIN 66 511 IPR044592 -
Trre11g04123 512 MobiDBLite consensus disorder prediction 9 24 - -
Trre11g04123 512 CDD RING-HC_RING1-like 131 196 - -
Trre11g04123 512 ProSitePatterns Zinc finger RING-type signature. 150 159 IPR017907 -
Trre11g04123 512 MobiDBLite consensus disorder prediction 277 297 - -
Trre11g04123 512 Coils Coil 40 61 - -
Trre11g04123 512 MobiDBLite consensus disorder prediction 51 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04123 Trre-Chr11 54118282 54125213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04123 132 302 C3H Transcription Factor Family AT2G30580 28.877 3.48e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04123 K10695 - gmx:100776547 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04123 11 54118282 54125213 Trre11g04123 11 54118282 54125213 ECH