Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04121 ATGTGGCATGAAATTTTGTTTCATGTTGTATTTGGTTGTTGGGTTGTTCTGCTTTTACTTAGTCCTGTGTCTGGTCTCAGACCCTTAAAGGATGATCAGATTCTGGTAACAAGAAAGGACGAAAGTGTCGTACGTCCTTTTTCAGAGTGGAACATAACAGGAACATACAAAGGGACATGGAAATTTTTAGATACCGCAAACGGCTCTTCGAGATTTCCAGACACCAGTAGAACAAATGGCAATTCCATAATCACATTAAGCAGTACACCTACGACGATAACTGGAGTACATTATGTCCATGGAATAGTTATATTCGATGATTTGTTTGACAATGAACATGATGTTGGTAGTGCTCAAATCAGCTTCGAAGGCGTATATATATGGCCTTTTAAACAGCTCAGAATGGTAACAAACAGTGGAAAAGGAGAGTTGAATCAGTACGAAGATTATATTTTATCGAATCCATATCGTCTACTTGCAGCTTTCTCATCTCAGACACTGCAAGGTTCGTCGCGAGATAAGATGTGGAGAAGAAAACATTCACTAATGCATGAAATGGAGAAACATTGTAATGCTGAAATTTCTGCGATGGTTTCGCACTTGCCATCGTCAAAAAATGAAGGCGAGCATGACCATTTTTCTCTCGAAGGGTTAATAAAGAGTCCTCCGGTGGATGATAGCGGAAACTGTTTGTCACCATTAGTATTAAATGCGACTTCTGTTATAAGAATTGATGTCGACTATAACAAAGCAGTGTACTATACTTTGATGGTTGCTTTTGTCTCTTTCTTGCAAGTTCTTCTGTTGATTCGTCAAATCAACCATAGCGGCACTCAATCTGGAGCTGCTAAGGTGTCGATATTAATGATCGGTCAACAAGCATTAATGGATGCCCATTTTACCCTTTTACATCTGACTACAGGAATGATAGTTAAATCCATGTTAATTGTTTTTGCAATGGCTACGTTTTTCAAGTTTGTGCTCTTCTCAGTATTTGAGGCGAGATATCTCGTTGTCATTTGGAAGGCAGGTAATAGGTCTTCGATTAACGGAGAAGGTTACGAGGCTACGAGGCATGAACTGTGGCGTGAGCTTTCACTTATACACAGTTGTTTATATGGGACACTGTTAATAGCAGGCATTATAAGCATGTATGAGTTCCATAATCATATGAAACTGATTCTTCTTCTTATGTACTCATTTTGGATACCTCAGATAATCAGCAATGTTATTCATGATTCACGCAAACCTTTGGATCCTCATTATATATTAGGAATAACTGTTACTCGGCTCGCAATCCCATTATATATATTTGGTTGGCCGAACAACTTCATGCACATCGAACCAGACAAGAACTGGTGTGTTTGTTTGACTATGTTTCTTGGGCTTCAAGCTATATTTCTTCTCCTTCAACACTACCTTGGACCACGTTGGTTCATTCCTCGTCAGATTTTACCTGAGAAATACAACTATCATAGAAAGTTTGATCATAATAAAAGACATGCAACAGAATGTGTTATTTGCATGACAGCCATTGATCTTTCTCACATAACAAGTGATTGCATGGTTACACCTTGTGATCATTTTTTCCATTCTGGTTGTTTACAAAGATGGATGGATATAAAGATGGAGTGTCCAACTTGCCGTCGCGCTTTACCATATGCTTAG 1668 0.3867 MWHEILFHVVFGCWVVLLLLSPVSGLRPLKDDQILVTRKDESVVRPFSEWNITGTYKGTWKFLDTANGSSRFPDTSRTNGNSIITLSSTPTTITGVHYVHGIVIFDDLFDNEHDVGSAQISFEGVYIWPFKQLRMVTNSGKGELNQYEDYILSNPYRLLAAFSSQTLQGSSRDKMWRRKHSLMHEMEKHCNAEISAMVSHLPSSKNEGEHDHFSLEGLIKSPPVDDSGNCLSPLVLNATSVIRIDVDYNKAVYYTLMVAFVSFLQVLLLIRQINHSGTQSGAAKVSILMIGQQALMDAHFTLLHLTTGMIVKSMLIVFAMATFFKFVLFSVFEARYLVVIWKAGNRSSINGEGYEATRHELWRELSLIHSCLYGTLLIAGIISMYEFHNHMKLILLLMYSFWIPQIISNVIHDSRKPLDPHYILGITVTRLAIPLYIFGWPNNFMHIEPDKNWCVCLTMFLGLQAIFLLLQHYLGPRWFIPRQILPEKYNYHRKFDHNKRHATECVICMTAIDLSHITSDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRALPYA 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04121 555 SMART ringv_2 504 549 IPR011016 GO:0008270
Trre11g04121 555 Pfam Ring finger domain 504 549 IPR001841 -
Trre11g04121 555 SMART ring_2 505 548 IPR001841 -
Trre11g04121 555 PANTHER RING ZINC FINGER PROTEIN 123 553 - -
Trre11g04121 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 491 555 IPR013083 -
Trre11g04121 555 ProSiteProfiles Zinc finger RING-type profile. 505 549 IPR001841 -
Trre11g04121 555 FunFam E3 ubiquitin-protein ligase, putative 491 555 - -
Trre11g04121 555 SUPERFAMILY RING/U-box 486 553 - -
Trre11g04121 555 CDD RING-H2_TUL1-like 500 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04121 Trre-Chr11 54103631 54107997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04121 492 553 C3H Transcription Factor Family AT1G53010 31.746 7.17e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04121 K23788 - gmx:100780140 818.92