Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04119 ATGGCTACGAAGAGGGCTAGTTTTGTTTTGATTATGTCAATGATCATTCTTAGTTTTTCATTGTCATATGGTATTAAATTTAACGTTGGTGGCAAAGATGGTTGGGCTGTGGAACCTTCACAATGGTATGGTCAATGGGCTGAGAAAAATAGGTTCCAAATCAATGACACACTTTATTTTAAGTACAATAAAGGATCTGATTCAGTGTTGGTAGTAAGCAAAGAAGATTACTACTCATGCAACATATTGAATTCGATCCAGAAATTGGACGGTGGAGATTCAACTTTCACATTTGACAAATCAGGTCCTTTTTTCTTCATTAGTGGAAACGTTGAAAATTGCAAGAAGGGTGAAAAGTTAATTGTTATTGTTTTGTCACCAAATCACGGTCATCATGGTCCTCATCATCGCAAACAAGGTCCCGCACCTTCACCATCTTGGAAAGCTTCTTCACCAGCATGGACTCCAACATCGACACCTAATGCTCCTTCACCATCTTGGAAGGCTTCTTCACCAGCATGGACTCCAACATGGTCGCCGAAGGCTCCTTCACCATCTTGGAAGGCTTCTTCACCAGCATGGACTCCAACATGGACACCGAACGCTCCTTCACCATCTTGGAAGGCTCCTTCGCCGTCATTGCCACCTTCATCGAATGCTCCTTCACCATCAAGGACTCCATCATGGACACATGATTCAAATGCTCCTTCCCCGTCATCGAAGGCTCCTTCACCGGCATGGACTCCAGCATGGACACCTACATCAAATGCTCCTTCATCACCATCATCGAAAGCTCCTTCACCTGCATTGACTCCAACATGGACACCTACATCGAATGCTCCTTCACCAATCGAGGCTCCAGCATGGACACCTGTATCGGACACTCCTTCACAGAGTGTTGTTGGCGAGGTATCTCCGGCCCCGTCTCCTGCTCATTCGGGTTCAACTAGGTTTAGTGGTTTTGGTGTTGGATTTGGGGTTGCCTTGATCATAGGAATCTTTGTTATTTAG 1011 0.45 MATKRASFVLIMSMIILSFSLSYGIKFNVGGKDGWAVEPSQWYGQWAEKNRFQINDTLYFKYNKGSDSVLVVSKEDYYSCNILNSIQKLDGGDSTFTFDKSGPFFFISGNVENCKKGEKLIVIVLSPNHGHHGPHHRKQGPAPSPSWKASSPAWTPTSTPNAPSPSWKASSPAWTPTWSPKAPSPSWKASSPAWTPTWTPNAPSPSWKAPSPSLPPSSNAPSPSRTPSWTHDSNAPSPSSKAPSPAWTPAWTPTSNAPSSPSSKAPSPALTPTWTPTSNAPSPIEAPAWTPVSDTPSQSVVGEVSPAPSPAHSGSTRFSGFGVGFGVALIIGIFVI 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04119 336 SUPERFAMILY Cupredoxins 24 125 IPR008972 -
Trre11g04119 336 MobiDBLite consensus disorder prediction 223 284 - -
Trre11g04119 336 FunFam Early nodulin-like protein 1 24 129 - -
Trre11g04119 336 MobiDBLite consensus disorder prediction 144 202 - -
Trre11g04119 336 CDD OsENODL1_like 26 125 IPR041846 -
Trre11g04119 336 Pfam Plastocyanin-like domain 35 117 IPR003245 GO:0009055
Trre11g04119 336 MobiDBLite consensus disorder prediction 127 317 - -
Trre11g04119 336 Gene3D - 25 134 IPR008972 -
Trre11g04119 336 MobiDBLite consensus disorder prediction 203 222 - -
Trre11g04119 336 PANTHER BLUE COPPER PROTEIN 26 183 IPR039391 GO:0009055
Trre11g04119 336 MobiDBLite consensus disorder prediction 291 316 - -
Trre11g04119 336 ProSiteProfiles Phytocyanin domain profile. 25 126 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04119 Trre-Chr11 54094465 54095941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04119 3 166 Phytocyanin Superfamily AT4G28365 45.833 6.88e-45 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04119 - - tpra:123894715 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04119 11 54094465 54095941 Trre7g02286 7 18351850 18352567 PCT