Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04111 ATGGAACATGATCAACAAGTATGTCAACCTTCTTCTTCTTCTTCTTCTTCAACCAAAGTGGAAAGAAAGATTGTTGAGAAAAATAGGAGAAATCACATGAAGAACCTCTTTTCCAAACTCAACTCTCTTCTCCCTAACTATAGTAACAAGGAAGCGTTACCATTGCCTGAACAAGTAGAGGAGGCTATAAACTACATAAAGAGCCTAGAGACAAATGTAAAGTTGGTGAAGGAAAAGAAAGAAGGTTTAATGGAAAACAAGAGATCACATAGTGGCTGCTCGAGTTCTTCTGAAGCAAAAAGAAACATAATATCACCCAAAATTGAGATTCATGAAATGGGTTCTTCTCTACAAGTCATTATAACATGTGGGGTTAATGATCAATTCATTTTATGTGAAATTATTCGAATACTTCATGAAGAAAATTTGGAGGTCATTACCGCAAATTCTTCGGTAGCCAAAGATTCAATTTTTCATATTTTGCATGCCGAGATTCCACAATCTTTGCTTCAATTTGGGGCAACTAAAGTAAGTGAGAGATTGAAAATGTTTGTGAACGGATCAGGGAGTGAGATAGAAACAGAGCCTCAACTGTGGGATTTTGAAATTGGAACTCAGAATTCGGAGCTTCTAGATTCTATAGTAACCAAGAGTTTACCAAATCTTTGA 669 0.3602 MEHDQQVCQPSSSSSSSTKVERKIVEKNRRNHMKNLFSKLNSLLPNYSNKEALPLPEQVEEAINYIKSLETNVKLVKEKKEGLMENKRSHSGCSSSSEAKRNIISPKIEIHEMGSSLQVIITCGVNDQFILCEIIRILHEENLEVITANSSVAKDSIFHILHAEIPQSLLQFGATKVSERLKMFVNGSGSEIETEPQLWDFEIGTQNSELLDSIVTKSLPNL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04111 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 17 69 IPR011598 GO:0046983
Trre11g04111 222 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 15 183 - -
Trre11g04111 222 Gene3D - 9 98 IPR036638 GO:0046983
Trre11g04111 222 Pfam Helix-loop-helix DNA-binding domain 19 70 IPR011598 GO:0046983
Trre11g04111 222 SMART finulus 23 75 IPR011598 GO:0046983
Trre11g04111 222 MobiDBLite consensus disorder prediction 1 22 - -
Trre11g04111 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 90 IPR036638 GO:0046983
Trre11g04111 222 FunFam Transcription factor bHLH162 11 95 - -
Trre11g04111 222 Coils Coil 59 86 - -
Trre11g04111 222 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04111 Trre-Chr11 54027565 54031600 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04111 9 186 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 40.426 9.44e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre11g04111 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04111 - - mtr:25487667 274.248