Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04110 ATGGATCATGATAAACAAGGTTGTCAACCACCTTCTTCAATCAAAGTGGAAAGAAAGATTGTTGAGAAAAATAGGAGAAATCAGATGAAGATTCTCTTTTCCAAACTCAACTCTCATCTCCCTAGATGTAATCCCAAGGAAGTGCTACCAATAATTGATCAAGTAGACGAAGCTATAAACTACATAAAGAGTTTAGAGACAAATGTGAAGTTGGCAAAGGAGAAAAAAGAAAGTTTAATGAGAAATAAGAGATCACGTGGTGACTGCTCGAGTTCTTCTGGAGCAAAACGAAGCACAACTTCATCAAAAATTGAGATTCATGAAATGGGCACCTCTTTACAAATCATTGTAACATGTGGAGTTGATCATCAATTCATTTTCTATGAAATTATCCGAATACTGAATGAAGAGAATGTTGAGGTCATTTCTGCAAATTCTTCTTTAACTGGAGATTCCATTTTTCATATCGTGCACGCTGAGATGCCACAATCTTTATTTCAATTTGGAGCTACCAAAGTAAGTGACAGATTGAAAAGTTTTGTGAACGGATCTGTGAGTGAGGTGCAAATAGTTCCTCATTTGTGGGATTTTGAAATTGGAGCTGAGGCTTGGGAGCTACATTCTATAGTAAACAAGAAGAGTATTTAA 648 0.3596 MDHDKQGCQPPSSIKVERKIVEKNRRNQMKILFSKLNSHLPRCNPKEVLPIIDQVDEAINYIKSLETNVKLAKEKKESLMRNKRSRGDCSSSSGAKRSTTSSKIEIHEMGTSLQIIVTCGVDHQFIFYEIIRILNEENVEVISANSSLTGDSIFHIVHAEMPQSLFQFGATKVSDRLKSFVNGSVSEVQIVPHLWDFEIGAEAWELHSIVNKKSI 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04110 215 Pfam Helix-loop-helix DNA-binding domain 16 66 IPR011598 GO:0046983
Trre11g04110 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 83 IPR036638 GO:0046983
Trre11g04110 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 65 IPR011598 GO:0046983
Trre11g04110 215 SMART finulus 19 71 IPR011598 GO:0046983
Trre11g04110 215 Coils Coil 55 82 - -
Trre11g04110 215 FunFam Transcription factor bHLH162 6 91 - -
Trre11g04110 215 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 12 181 - -
Trre11g04110 215 MobiDBLite consensus disorder prediction 85 103 - -
Trre11g04110 215 Gene3D - 10 92 IPR036638 GO:0046983
Trre11g04110 215 MobiDBLite consensus disorder prediction 75 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04110 Trre-Chr11 54018860 54021046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04110 16 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 38.983 6.44e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre11g04110 HLH 8.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04110 - - mtr:25487667 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04110 11 54018860 54021046 Trre11g04110 11 54018860 54021046 ECH
Trre11g04110 11 54018860 54021046 Trre7g02306 7 18638244 18639043 PCT