Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04107 ATGGCCAGAGCTTTAGATTTCATTAAGGATATCAACAATGGAAAGGAACTTTGGAAATTTGTTGTCCGACTCGAAGATATTTGGAAAACTGGTATAGGGAAAGGTGAACACTTGGAGTTTCTCATTCTCGACAAACAGGGAGATAAAATTCAGGTTGTTCTTCCATCTGATCTTTGCCCTTTGTTTGGGCCTAAACTTGAAGAAGGAGCCACATACATTATGAAAAATTTTAAAGTTCAGCCAAATGATTTGAAGGTCAAATTTTGTGATCACCCTTTCACTTTAGTTGGATTTGCCGGTGAAGGAGAATCTGAAATTATTCCAACAAAGATACCAAACATTCCCAAATATAAGTTTAATTTCAAATCTTTTGATGATATCAAACATGGCAAGTACCGCGCTGATATGTTAGTAGATATCATAGGTGTTGTACATGAGGTTAAACCGGATAAAAAATCATTTGGGACAAAGAAACTCCCAACTACCTTTTCTTTGGCTGATGCGTCGATGAACATACTTACATGCTCTTTATGGGGTAAGTATCAAACCGAATTTCTTGCCAAATACAACGAGAACGCCTGTGGAGGTCCAGTTGTTGTCATTCTTAAACATGCTGCTATCAGGGAACCTCAAGGTCATATTTTCATGCCGATATTTTATGTGATCAATTTCACTTCACATGCTGCTAATTAA 693 0.3709 MARALDFIKDINNGKELWKFVVRLEDIWKTGIGKGEHLEFLILDKQGDKIQVVLPSDLCPLFGPKLEEGATYIMKNFKVQPNDLKVKFCDHPFTLVGFAGEGESEIIPTKIPNIPKYKFNFKSFDDIKHGKYRADMLVDIIGVVHEVKPDKKSFGTKKLPTTFSLADASMNILTCSLWGKYQTEFLAKYNENACGGPVVVILKHAAIREPQGHIFMPIFYVINFTSHAAN 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04107 230 Gene3D - 5 99 IPR012340 -
Trre11g04107 230 CDD RPA1_DBD_A_like 22 93 - -
Trre11g04107 230 CDD RPA1_DBD_B_like 139 212 - -
Trre11g04107 230 Gene3D - 113 226 IPR012340 -
Trre11g04107 230 SUPERFAMILY Nucleic acid-binding proteins 119 215 IPR012340 -
Trre11g04107 230 SUPERFAMILY Nucleic acid-binding proteins 7 96 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04107 Trre-Chr11 53988176 53989301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04107 33 181 Core DNA Replication Machinery Family AT2G06510 24.342 6.75e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04107 - - lang:109343677 149.058