Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04105 ATGCCTCAACTTAAGCAACTTCTCATTCTTCTTCACACTGTATCCATATTTATATGTTGTGTTTCAAGTACTGAATTTGTCTATAATACAAACTTCAACTCAACAAACATTGCCCTATATGGAAATGCAACTATTCAGAAATCCATTCTCACTCTCACTAATGGCACTTATTTCTCTATAGGTCGTGCTTTTTACCCTCTAAAAGTACCAACCAAATCACCCAACTCTTCCACTCTTCTCCCCTTTGCTACTTCCTTCATTTTCTCAGTTGCCCCCATAAAAAACATTATCACAGGACATGGTTTTGCCTTCATATTCACACCTTCGAGAGGTCTAAATGGAACAACATCAAACGAGTATATCGGTCTCTTCAATTTGACCAATGAAGGTAATCCTAACAACCATGTTTTTGGAGTTGAATTCGATATCATTAGAAACGAAGAATTCAATGATACAAATGGTAATCATGTTGGTATCGATGTAAACTCGCTTAAATCGTTAACTTCACATGAGGCTGGCTACTGGGGCGGAAAATATGACAATGAATTTACGGTGTTGAACATCAAAAGTGGAGAAAATTATCAAGTATGGATTGAATTTATTCATTCCCGGCTAAACGTTACAATGGGTCGGGTAGGACAAAAGAGGCCTCGTGTTCCTCTCATCAGTATCAATGTTAACCTTTCTGGGGTCCTTATGGATGAAACATACGTTGGATTCTGCGCAGCCACAGGGAAAATAATAGACAGTAGTAAGATTCTTGCTTGGAGCTTTAGTAATACAAATTTTTCAATTGGTGATGCTTTAGTGACAAACAACTTGCCTTCATTTGTTCCTCATAAGGGATGGTTTTTTGGAGTGAAGGCTATAGTTGTAGGAGTCATTGGTGTTGTCTGTGTTTTAATCATCAGTTGCGGTTGTGTAGTCTTTTTCATCCTATATAGAGAGGAAAAAGAAAAAGAAGAAATTCAAGAGTGGGAACTAGAATATTGGCCACATAGAATTAGTTTCGAAGAGATTCATGCAGCAACAAGAGGGTTCTCTGAAGAGAATGTGATTGCTATAGGAGGGAATGGAAAGGTATATAAAGGGATTTTGCAAGGAGTTGAAGTTGCGGTAAAGAGAATCCATCAAGAAAGAGAAGATGGAATGAGAGAGTTTTTGGCTGAGGTTTCAAGCATAGGAAGAATGAAACACAGAAATTTAGCAGGGTTTCGAGGTTGGTGCAAAAAAGAGAAGGGAAACTTGATTCTAGTTTATGACTTCATGAACAATGGAAGTTTAGACAAATGGATCTTTGAGTGTGAAGAAGGAAAGATGTTAACATGGGAAGAGAGGATTCAAGTTTTGAAAAATGTAGCCGCGGGGATTCTTTACCTGCATGAGGGTTGGGAAGTTAAGGTCTTGCATAGGGATATCAAAGCAAATAATGTTCTACTTGACAAGGAAATGAATGCTAGATTGGGGGATTTTGGTTTGGCTCTTATGCATGAGCATCATGGAGAAATTGCCACCACAACAAAAGTATTGGGAACATTAGGATACATTGCTCCGGAAGTGATTCGGACAGGAAGAGCATCGACTATGTCGGATGTGTTTGGCTTTGGAATATTGTTGTTGGAAGTAATATGCGGACGAAGACCAATTGAAGAACATAAACCAGGACTAATTGAATGGGTGGAGTCCCTAATGGTGCTTGGCCAATTACACAATGCTGTTGATGAAAGGTTGAAGGACAAAGGAGGATACACTATTGAAGAAGCTGAGAGATTTCTTCATTTGGGTTTGTTGTGTTCAAATTCAGACCCTAGTGTTAGACCAATAATGAGGCAGGTTGTGAAAATGTTGGAGGGAGAAATGGATAACATTGAATCTGATGAAGGAAATATGGAGAAGAGTTTACTTGGAAGAATAAAATCAACTGCAATGTGGTCTAGAACTGAAAGTGGATACAAAGATTATCCTAGTTTTGAAGAAATTATGATGTTTATCGATAATACCAAGACATCTACAAGTGGTTCAACCGCTATACAAGCATCAGATTCAGATATCATTTCGGAAGGTAGATAA 2070 0.3821 MPQLKQLLILLHTVSIFICCVSSTEFVYNTNFNSTNIALYGNATIQKSILTLTNGTYFSIGRAFYPLKVPTKSPNSSTLLPFATSFIFSVAPIKNIITGHGFAFIFTPSRGLNGTTSNEYIGLFNLTNEGNPNNHVFGVEFDIIRNEEFNDTNGNHVGIDVNSLKSLTSHEAGYWGGKYDNEFTVLNIKSGENYQVWIEFIHSRLNVTMGRVGQKRPRVPLISINVNLSGVLMDETYVGFCAATGKIIDSSKILAWSFSNTNFSIGDALVTNNLPSFVPHKGWFFGVKAIVVGVIGVVCVLIISCGCVVFFILYREEKEKEEIQEWELEYWPHRISFEEIHAATRGFSEENVIAIGGNGKVYKGILQGVEVAVKRIHQEREDGMREFLAEVSSIGRMKHRNLAGFRGWCKKEKGNLILVYDFMNNGSLDKWIFECEEGKMLTWEERIQVLKNVAAGILYLHEGWEVKVLHRDIKANNVLLDKEMNARLGDFGLALMHEHHGEIATTTKVLGTLGYIAPEVIRTGRASTMSDVFGFGILLLEVICGRRPIEEHKPGLIEWVESLMVLGQLHNAVDERLKDKGGYTIEEAERFLHLGLLCSNSDPSVRPIMRQVVKMLEGEMDNIESDEGNMEKSLLGRIKSTAMWSRTESGYKDYPSFEEIMMFIDNTKTSTSGSTAIQASDSDIISEGR 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04105 689 FunFam L-type lectin-domain containing receptor kinase S.4 22 266 - -
Trre11g04105 689 Gene3D Transferase(Phosphotransferase) domain 1 423 638 - -
Trre11g04105 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Trre11g04105 689 PANTHER - 41 620 - -
Trre11g04105 689 SUPERFAMILY Protein kinase-like (PK-like) 323 617 IPR011009 -
Trre11g04105 689 MobiDBLite consensus disorder prediction 670 689 - -
Trre11g04105 689 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 308 422 - -
Trre11g04105 689 Pfam Legume lectin domain 24 262 IPR001220 GO:0030246
Trre11g04105 689 SMART serkin_6 347 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04105 689 Pfam Protein kinase domain 349 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04105 689 Gene3D - 22 266 - -
Trre11g04105 689 Gene3D Phosphorylase Kinase; domain 1 310 422 - -
Trre11g04105 689 FunFam L-type lectin-domain containing receptor kinase S.4 423 629 - -
Trre11g04105 689 ProSiteProfiles Protein kinase domain profile. 347 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04105 689 CDD lectin_legume_LecRK_Arcelin_ConA 24 261 IPR001220 GO:0030246
Trre11g04105 689 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 263 IPR013320 -
Trre11g04105 689 CDD STKc_IRAK 353 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04105 Trre-Chr11 53981251 53983320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04105 21 564 Receptor kinase-like Gene Family AT4G04960 56.884 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre11g04105 Pkinase 1.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04105 - - gmx:100776006 1060.83