Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04104 ATGGGTTGCATAACTTCCAAGAGTTCAGCTGTGGATGATAGTAGAGAAGGCTTGACAAAGGATTTGGGATCATCTAAAAAAAGGAACTTTGAGAAGAAGGTTTCACGATCAGATTCGAAGAAAAGGGTTGAAGGAGTTTTGGAGAAAGATGCGTTATTGGATGGTATTGGTTTGAAAGTTTCATTGATTGACAAGGAAGCTAATAATGGTTCGGTGTGGTTGTATGATGATCAGAATGAGAAGAAGAAAATGGAGAAACCCGAATTGGCTGTTGTTGTTGATTGTCCGCGTATTGGAAGGGTTCCGAAGGCTTTAGGAGGAGAGCAAGTTGCAGCTGGATGGCCAACTTGGCTTTCTTCTGTTGCCGGTGAAGCTATCAATGGATGGATACCGCGAAGTGCGCACACTTTTGAGAAGTACGATAAAATTGGTGAAGGAACTTACAGCACTGTTTATAAGGCACGTGATTTGATTAACCAAAAGGTTGTTGCCTTGAAGCGGGTACGCTTTGATAATCTTGACCATGAGAGTGTCAAGTTCATGGCAAGAGAAATCATTTTTCTGCGTAGGCTTGACCATCCAAATGTAATAAAGTTGGAGGGCTTGATAACATCGCAGTCGTCTCGCAGCTTGTACCTTGTTTTTGAATATATGGAACACGATCTTACAGGACTTGCAACAGCACCTAGCATTAAGTTTTCTGAACCACAGATTAAATGTTACATGAAGCAGCTTCTTAGTGGATTGGATCATTGCCATAGTCGTGGTATCCTCCATCGTGATATAAAGGGCTCAAATCTTCTCATCGACAATAATGGCATATTAAAGATTGCAGATTTTGGTTTGGCAAATTTTTTTGAGCCCGATCAAAGTGTTCCGTTGACCAGCCGGGTAGTAACTCTGTGGTATAGACCACCAGAACTTTTACTTGGATCCTCAAATTATGGAGTTGCAGTGGATATGTGGAGCACTGGTTGCATACTCGGTGAACTATACTCTGGCAGGCCTATATTGCCGGGAAAAACCGAGGTTGAGCAATTGCATAGGATTTTTAAACTTTGTGGATCACCATCTGTGGACTATTGGAAAAAACTGCGGCTGCCACATTCTGCAGTATTCAGGACTCCACACCATTATAGGAAATGTATTGCCGATACATTTAAAGAATTTCCATCTGCTGCTATGAGGCTTATAGAGACCCTACTCTCTTTAGATCCAACACTTCGAGGAACAGCAGCTACAGCTCTAAAGAGTGAGTTCTTTTCATCGGAACCCCTTGCTTGCGATCCATCAACTTTGCCAAAATATCTTCCCAGCAAAGAGATTGACACTAAATTGCGGGAAGAATCAAGAGGAAGGCAAGGAGCTCTTGGGGGAAAGGAGCAAAAAGTTGGGCCACGAGTTAGACAAGAGAAAGAAACTCAGTCATTTGTCTTATCCAAAGCCAAAGTTGACTCCCGCATTTCAGGACAGCAAGGGCAACGTTTTCCAAACATGGCGTGCCAGAATGAACGGTTCAACCCTCACAGAGTACCTCCTGTATCTGGATTTATGGGTTTTCGACACAAACAGTCAGAAGATGCTAAAAAGACAGTTAATTATTTCTCTGGGCCTCTTTACCAGAGGCCTTCACATTCAGGGTTACTGGTTCCAGATTCGGGCCGACACAAATATGGAAAAGAAGCTAGTGAGAGATTTCTTCCTGTTTCAAATAAAGTCGATTCAAAACCATCTAGAACTTCATTGTCTCGAAATCAAAAAAAAAATCCAGCTTCTTTGAGTCCCCAAGATACAACTCAAGTACAAAAATCTTTAGGGTTGAGTAATGGATCAGAGTCAAGAAGGCGGCATGATAGAAAACGCCATTCTCAGATAGTTGATCTCAGCCAAACAGAAAATGGAAAGGACGGGCATGCACCCAGCGGCAACAATCTCTATATGTCTGGTCCATTGTTGGTTTCGTCAAACAATATGGATCAGATGCTCAAAGAGCGCGATCGGAAGATCCAAGAATATTCAAGGCGAACCAGAAATAAATAG 2040 0.4235 MGCITSKSSAVDDSREGLTKDLGSSKKRNFEKKVSRSDSKKRVEGVLEKDALLDGIGLKVSLIDKEANNGSVWLYDDQNEKKKMEKPELAVVVDCPRIGRVPKALGGEQVAAGWPTWLSSVAGEAINGWIPRSAHTFEKYDKIGEGTYSTVYKARDLINQKVVALKRVRFDNLDHESVKFMAREIIFLRRLDHPNVIKLEGLITSQSSRSLYLVFEYMEHDLTGLATAPSIKFSEPQIKCYMKQLLSGLDHCHSRGILHRDIKGSNLLIDNNGILKIADFGLANFFEPDQSVPLTSRVVTLWYRPPELLLGSSNYGVAVDMWSTGCILGELYSGRPILPGKTEVEQLHRIFKLCGSPSVDYWKKLRLPHSAVFRTPHHYRKCIADTFKEFPSAAMRLIETLLSLDPTLRGTAATALKSEFFSSEPLACDPSTLPKYLPSKEIDTKLREESRGRQGALGGKEQKVGPRVRQEKETQSFVLSKAKVDSRISGQQGQRFPNMACQNERFNPHRVPPVSGFMGFRHKQSEDAKKTVNYFSGPLYQRPSHSGLLVPDSGRHKYGKEASERFLPVSNKVDSKPSRTSLSRNQKKNPASLSPQDTTQVQKSLGLSNGSESRRRHDRKRHSQIVDLSQTENGKDGHAPSGNNLYMSGPLLVSSNNMDQMLKERDRKIQEYSRRTRNK 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04104 679 CDD STKc_CDK9_like 137 421 - -
Trre11g04104 679 MobiDBLite consensus disorder prediction 561 659 - -
Trre11g04104 679 Gene3D Phosphorylase Kinase; domain 1 124 219 - -
Trre11g04104 679 SMART serkin_6 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04104 679 FunFam probable serine/threonine-protein kinase At1g54610 124 219 - -
Trre11g04104 679 FunFam probable serine/threonine-protein kinase At1g54610 220 461 - -
Trre11g04104 679 SUPERFAMILY Protein kinase-like (PK-like) 131 427 IPR011009 -
Trre11g04104 679 MobiDBLite consensus disorder prediction 13 39 - -
Trre11g04104 679 MobiDBLite consensus disorder prediction 445 474 - -
Trre11g04104 679 MobiDBLite consensus disorder prediction 1 39 - -
Trre11g04104 679 ProSiteProfiles Protein kinase domain profile. 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04104 679 PANTHER CELL DIVISION PROTEIN KINASE 136 426 - -
Trre11g04104 679 MobiDBLite consensus disorder prediction 573 609 - -
Trre11g04104 679 Gene3D Transferase(Phosphotransferase) domain 1 220 457 - -
Trre11g04104 679 ProSitePatterns Protein kinases ATP-binding region signature. 143 166 IPR017441 GO:0005524
Trre11g04104 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Trre11g04104 679 Pfam Protein kinase domain 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04104 Trre-Chr11 53975130 53979222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04104 129 464 Core Cell Cycle Gene Families AT5G10270 48.295 6.21e-109 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trre11g04104 Pkinase 1.3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04104 - K08819 gmx:100775462 965.296