Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04101 ATGGAGCCTTTACTACGAGGCGAAAGCAGTGGCTTAAGACACCGTTCGCGAGGAATAGTTCGCCGTACCGATGCTATCACCTATGGTTCTAATTACGAGAAAGCCGCCGCACTCATCGATCTGGCTGAAGATGGTGTTGGTATACCTGAGCAGCTTCTGGATTCATCAAGCTTTCAAAGTTATTCCAAATATTATTTTATGTTCACTAAATTAGATCTCCTCTGGTCTCTTAGTTATTTTGCTCTGATAATCCTGAATTTTCTGGAGAAACCTCTATGGTGTGAAAAGACCACACATTCTTGCAATGATAGAGAGTATTTCTTTTTGGGAGAGTTGCCATATCTAACTGCTGCAGAATGTATTATTTATGAGGGAATAGTTCTTGTTTTCCTAACCATTCATACTTTCTGTCCGTTATCGTATGAAGGGTCCCCTATATTTTGGAGAAGTCCTATTAATTTATTGAAGGCCTTCTGTTTGTTAGTTATCCTTGTTGATATGCTGGCTTATGCTCTGTATATATCGCCAGTGGCTTTTAATTTTCTACCTTTCAGAATTGCACCTTATATCAGGGTTGTTCTTTTCGTTCTGAATATTAGGCAGCTACGAGAAACTGTCATCATTGTGGCTGGAATGCTTGACACATACTTAAATATCTTGGCTTTGGGGCTTCTGTTTCTTGTTTTTGCAAGTTGGGTGGCTTATGTGATTTTTGAAGATACAATACAGGGGAAAACAGTATTCACTTCCTATAGTGCAACGTTATATCAGATGTTTCTTTTATTTAACACAGACAATAATCCAGATGTTTGGGTTCCTGCATACAAGTCTTCACGTTCGTCTATCCTGTTTTTCATTCTGTTTGTGCTGATTGGAGTCTACTTTGTTACAAACTTGATTCTTGCCGTTGTTTACGATAGTTTCAAGAGTGAGCTTGTAAAACAAGTTTCGGAGATGGATCGTATGAGAAGAGCTATGTTGGAGAAAGCTTTTAATCTCCTAGATACACATAGTGTTGGATATCTCAAGAAAGATCAATGCATTAGGCTCTTTGAGGAGGTGAACAAGTACAGGACTTTGCCAAAAATCTCCAATGAAGAATTTGAATTGATATTTGATGAGCTGGATGACACTCATGATGTAAAGATCAACAAAGATGAATTTGCTGATATTTGCAATGCCATTGCTTTAAGATTCCAGAAGGAGGATGTGAGTTCTTACTTTGACTATTTAGTATTCTACCATTCATCCACCTCAAAGAGATTGAAAGCATTCGTAAAGAGCACCATATTTGGATACATAGTGACCTTTGTTCTCATATTGAATCTGGTTGCTGTAATTATTGAGACAACGCTTGACGTAAATGAAAATTCTGCTCAAAAGGCATGGCAAGTGGTTGAGTTCACTTTCGGGTGGATATATGTAATAGAAATGATACTAAAGGTTTACTCTTATGGATTCGAAAACTATTGGCGGGATGGTCAAAATCGCTTTGATTTTGTGATCACAGTGACAATTGCCATTGGAGAAACTATAGATTTTGCTGCACCTGATGATGGTCTGCCATTTTTCACAAATGGAGAATGGATTCGTTACCTCCTTCTTGCAAGAATGTTGAGATTGATAAGGCTCCTAATGTATGTCCAGCGATTTCGAAGTTTCGTGGCAACTTTCTTAACTCTTATACCAAGTTTGATGCCATATCTCGGGACCATATTTTGCATATTGTGTATTTATTGCTCACTTGGTGTCCAGATTTTTGGTGGATTAGTTAATGCTGGAAACCCAGATTTGGAAGCCACGGACCTTGCTGCTAATGACTATTTACTTTTTAATTTCAATGATTATCCAAATGGAATGGTGACGCTATTCAATTTGCTAGTCTCAGAGGTCTGGCAAGAATTGATGGTGAGCTACAAGGATTTAACTGGAACTTCTTGGACCTATGCGTACTTCATTAGCTTCTACTTGATTACTGTTTTGCTGCTTTTGAATTTGATTATTGCTTTTGTCTTGGAGGCATTCTTTGCTGAAATAGAGCTTGAGTCATCAGAAAATTCTGATGAAAATGACAAGGAAAATGCGGGAGTTAGATATCCAAGGCGACGAACTCTTGGAACAAAATCACGAAGCCAGAGGGTTGACGCTCTTCTTCATCATATGCTGAGTGCTGAGCTGAAACAAAATCAGCCTTCCAATACATAA 2205 0.3832 MEPLLRGESSGLRHRSRGIVRRTDAITYGSNYEKAAALIDLAEDGVGIPEQLLDSSSFQSYSKYYFMFTKLDLLWSLSYFALIILNFLEKPLWCEKTTHSCNDREYFFLGELPYLTAAECIIYEGIVLVFLTIHTFCPLSYEGSPIFWRSPINLLKAFCLLVILVDMLAYALYISPVAFNFLPFRIAPYIRVVLFVLNIRQLRETVIIVAGMLDTYLNILALGLLFLVFASWVAYVIFEDTIQGKTVFTSYSATLYQMFLLFNTDNNPDVWVPAYKSSRSSILFFILFVLIGVYFVTNLILAVVYDSFKSELVKQVSEMDRMRRAMLEKAFNLLDTHSVGYLKKDQCIRLFEEVNKYRTLPKISNEEFELIFDELDDTHDVKINKDEFADICNAIALRFQKEDVSSYFDYLVFYHSSTSKRLKAFVKSTIFGYIVTFVLILNLVAVIIETTLDVNENSAQKAWQVVEFTFGWIYVIEMILKVYSYGFENYWRDGQNRFDFVITVTIAIGETIDFAAPDDGLPFFTNGEWIRYLLLARMLRLIRLLMYVQRFRSFVATFLTLIPSLMPYLGTIFCILCIYCSLGVQIFGGLVNAGNPDLEATDLAANDYLLFNFNDYPNGMVTLFNLLVSEVWQELMVSYKDLTGTSWTYAYFISFYLITVLLLLNLIIAFVLEAFFAEIELESSENSDENDKENAGVRYPRRRTLGTKSRSQRVDALLHHMLSAELKQNQPSNT 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04101 734 ProSiteProfiles EF-hand calcium-binding domain profile. 363 398 IPR002048 GO:0005509
Trre11g04101 734 FunFam Two pore calcium channel protein 1 421 554 - -
Trre11g04101 734 Gene3D - 420 554 IPR027359 -
Trre11g04101 734 SUPERFAMILY EF-hand 317 410 IPR011992 -
Trre11g04101 734 FunFam Two pore calcium channel protein 1 555 713 - -
Trre11g04101 734 MobiDBLite consensus disorder prediction 687 711 - -
Trre11g04101 734 Gene3D - 555 710 - -
Trre11g04101 734 Gene3D - 201 311 - -
Trre11g04101 734 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 3 731 IPR044581 GO:0005245
Trre11g04101 734 Pfam Ion transport protein 429 675 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre11g04101 734 Pfam Ion transport protein 126 310 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre11g04101 734 SUPERFAMILY Voltage-gated potassium channels 429 675 - -
Trre11g04101 734 FunFam Two pore calcium channel protein 1 201 312 - -
Trre11g04101 734 Gene3D - 312 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04101 Trre-Chr11 53928934 53948721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04101 2 734 Ion Channels AT4G03560 65.986 0.0 1015
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04101 K16900 - gmx:100806160 1145.95