Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04092 ATGTCGAACCGGGGTGATACTAAAGCAATTTCACACAAAAAATGTTCTAATGATCTTGATTGTGACATATGCTTGGAGCAAGTGAAAGATCCAGTGGTAACATTTTGTGGTCATCTCTATTGTTGGTCATGTGAGGTTCAACAAGATGGAAGTGTTATACCACCAAGACCATCTGGTCCTAGATCATTTGATAGTACTGCAAATGTTTCAGAACAACCTCAACAAGAACAAATACCAGAGAATGTTTGGTTGCACATTTTCTTAACATTTGGTCCACATAGGCTTGATTTGAGGAAATTCTATTGA 306 0.3758 MSNRGDTKAISHKKCSNDLDCDICLEQVKDPVVTFCGHLYCWSCEVQQDGSVIPPRPSGPRSFDSTANVSEQPQQEQIPENVWLHIFLTFGPHRLDLRKFY 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04092 101 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Trre11g04092 101 MobiDBLite consensus disorder prediction 61 75 - -
Trre11g04092 101 SUPERFAMILY RING/U-box 14 49 - -
Trre11g04092 101 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 11 44 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trre11g04092 101 Pfam RING-type zinc-finger 21 44 IPR027370 -
Trre11g04092 101 MobiDBLite consensus disorder prediction 53 75 - -
Trre11g04092 101 ProSiteProfiles Zinc finger RING-type profile. 21 44 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04092 Trre-Chr11 53880027 53880467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04092 16 44 C3H Transcription Factor Family AT4G28270 68.966 6.47e-11 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04092 K10666 - tpra:123896562 132.88