Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04091 ATGGCCTTCAATCAGTATTTTGAGGAGGGTGTGAACCAAATTGAGTCCTTGGAAGATAAACCATCTCAGGAAATGTGGAAATGTGCGAGTGCTGAAGCAATTTCGGGTTCTAGCGGCTTTGACTGCAACATATGTCTTGAGTGTGTGCAAGATCCGGTGGTCACTCTTTGTGGTCATCTCTATTGCTGGCCCTGCATTTACAAATGGCTTAATTTCCATGGAGAAATTGAAGATAAGCGAATGGAGAAGCCACAATGTCCGGTATGCAAATCAGAAATTTCAAAGTCTTCTCTTGTTCCGCTCTATGGCCGCGGCCAAACTACACCGCCTTCCAAAGGCAATGCTCAACAAGTAGCGAGTGTGATACCACCGAGACCGCTTGGTCCATCATCGTGGATGACTAACTTACCAAGATCACTTGATTCCGCATCTGTTTCGCAGCATACATCTCAGGTTTATCATCCTCATTATCTTAACCATACTCAAAGATACGCTTCACCGATGCTCAACACAGGCGGTTTAATGACCAATCCATTGGATACAACATATGGTGTCTTTGGTGAGATGATATATGCAAGGATCTTTGGTAACCAAGTGACAAACATATATACATACCCGAATTCGTATAATCTTTCAGGAATTAGTAATCCAAGGATGAGAAGGCATTTGATGCGAGCTGATAGGTCGCTTGGTAGAATCTGTTTCTTCCTTTTTTGTTGCGCAGTTTTGTGTCTTCTCTTGTTTTGA 747 0.4297 MAFNQYFEEGVNQIESLEDKPSQEMWKCASAEAISGSSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFHGEIEDKRMEKPQCPVCKSEISKSSLVPLYGRGQTTPPSKGNAQQVASVIPPRPLGPSSWMTNLPRSLDSASVSQHTSQVYHPHYLNHTQRYASPMLNTGGLMTNPLDTTYGVFGEMIYARIFGNQVTNIYTYPNSYNLSGISNPRMRRHLMRADRSLGRICFFLFCCAVLCLLLF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04091 248 ProSiteProfiles Zinc finger RING-type profile. 42 90 IPR001841 -
Trre11g04091 248 Pfam Zinc finger, C3HC4 type (RING finger) 42 89 IPR018957 GO:0046872
Trre11g04091 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 104 IPR013083 -
Trre11g04091 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 20 245 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trre11g04091 248 SMART ring_2 42 89 IPR001841 -
Trre11g04091 248 SUPERFAMILY RING/U-box 38 102 - -
Trre11g04091 248 ProSitePatterns Zinc finger RING-type signature. 57 66 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04091 Trre-Chr11 53867150 53867896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04091 34 248 C3H Transcription Factor Family AT4G28270 38.914 1.47e-44 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04091 K10666 - gmx:100785491 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04091 11 53867150 53867896 Trre11g04091 11 53867150 53867896 ECH