Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04080 ATGTCTTTTCCAATATCTCAACTTAAGCTACTTTTCATTCTTCTTCACACTTTAACCATAATTATATCTTGTGTTTCCACTACTGAATTTGTCTATAATACAAACTTCAACTCAACAAACATTGATCTATATGGAAATGCAACTATTCAGAAATCAATTCTCACTCTCACTAATGGCACTTATTTATCTACTGGTCGTGCATTTTACCCTCAAAAAGTGCCAACCAAACCACCAAACTTTTCCACTACTCTCCCCTTTGCTACTTCCTTCATTTTCTCAGTTGCTCCCATCAAAAACATCAACATAGGACATGGTTTTGCCTTCATATTCACACCTTCAAGAGATCTAAATGGAACGGTATCAAACGAGTATCTCGGTCTATTAAACTTGACCAATGAAGGTAATCCTAACAACCATGTTTTTGGAGTTGAATTTGATATCGTTAGAAACGAAGAGTTCAACGATATAAATGGTAATCATGTTGGTATCGACGTAAACTCGCTTGAATCTTTAACTTCTCACGAGGCTGGCTACTGGGGTGGAAAAGATGACAATGAATTTAAGGTGTTGAAGATAAAAAGCGGACAAAATTATCAAGTATGGATTGAATTTATTCATTCCCAACTAAACGTTACAATGGCTCGGGCTGGACAAACAAGGCCCCGTGTTCCTCTCATCAGTATAAAAGTTAACCTTTCTAAGGTCCTTATGGATGAAACATATGTCGGGTTTTGCGCAGCCACAGGGCGATTAATAGAGAGTACTAAGATTCTTGCTTGGAGCTTTAGTAATACAAATTTTTCAATTGGTGATGCTTTAGTGACAAACAACTTGCCTTCATTTGTTCCTCATAAGGGATGGTTTTTTGGAGTGAAGGCTATAGTTGTAGGAGTCATTGGTGTTGTCGGTGTTTTAATCATCGGTTGCGGTTGTGCAGTCTTTTTCATCCTATATAGAGAGGAAAAGGAAAAAGAAGAAATTGAAGAGTGGGAACTAGAGTATTGGCCACATAAAATTAGTTTCCAAGAGATTCATACAGCAACTAGAGGGTTCTCTGAAGAGAATGTGGTTGTTGTAGGAGGTAACAAAAGTGTATATAAAGGTGTTTTGCAAGGAGTTGAAGTTGCAGTCAAGAGAATCCCTCAAGAAAGAGAAGGGATGAGAGAGTTTCTGGCAGAGGTTTCAAGCCTAGGAAGATTGAAACACAAAAATTTAGTAGGACTTATAGGTTGGTGCAAAAAAGATAAGGGAAACTTGATTCTTGTTTATGACTTCATGAATAATGGAAGTTTAGACAAATGGATTTTTGAGTGTGAAGAAGGAAAGATGCTAACATGGGAAGAGAGGATTCAAGTTTTGAAAAATGTAGCCGCGGGGATTCTTTACCTGCATGAGGGTTGGGAAGTTAAGGTCTTGCATAGGGATATCAAAGCAAATAATGTTCTACTTGACAAGGAAATGAATGCTAGATTGGGGGATTTTGGTTTGGCTCTTATGCATGAGCATCATGGAGAAATTGCCACCACAACAAAAGTATTGGGAACATTAGGATACATTGCTCCGGAAGTGATTCGGACAGGAAGAGCATCGACTATGTCCGATGTGTTTGGCTTTGGAATATTGTTGTTGGAAGTAATATGCGGACGAAGACCAATTGAAGAACATAAACCAGGACTAATTGAATGGGTGGAGTCCCTAATGGTGCTTGGCCAATTACACAATGCTGTTGATGAAAGGTTGAAGGACAAAGGAGGATACACTATTGAAGAAGCTGAGAGATTTCTTCATTTGGGTTTGTTGTGTTCAAATTCAGACCCTAGTGTTAGACCAAGAATGAGGCAGGTTGTGAAAATGTTGGAGGGAGAAATGTATAACACTGAATCTGATGAAGAAAATATGGAGAAAGGTTTACTTCGAAGAATAAAATCAGCCGCAATGTGGACTAAATCTGAAAGTGGACTTCGAAACATAGATCACCCTACTTTCGAAGATATTAAAATATTTAGTTATAACTCTGAGAGTACTACAAGTGGCTCAAGTTCCATTCCTCAAGGATCACAATCAGAATCAGATTCAAATATCATTCGGGAAGGCTGGCAATGTTGTAGATTTTAA 2115 0.3806 MSFPISQLKLLFILLHTLTIIISCVSTTEFVYNTNFNSTNIDLYGNATIQKSILTLTNGTYLSTGRAFYPQKVPTKPPNFSTTLPFATSFIFSVAPIKNINIGHGFAFIFTPSRDLNGTVSNEYLGLLNLTNEGNPNNHVFGVEFDIVRNEEFNDINGNHVGIDVNSLESLTSHEAGYWGGKDDNEFKVLKIKSGQNYQVWIEFIHSQLNVTMARAGQTRPRVPLISIKVNLSKVLMDETYVGFCAATGRLIESTKILAWSFSNTNFSIGDALVTNNLPSFVPHKGWFFGVKAIVVGVIGVVGVLIIGCGCAVFFILYREEKEKEEIEEWELEYWPHKISFQEIHTATRGFSEENVVVVGGNKSVYKGVLQGVEVAVKRIPQEREGMREFLAEVSSLGRLKHKNLVGLIGWCKKDKGNLILVYDFMNNGSLDKWIFECEEGKMLTWEERIQVLKNVAAGILYLHEGWEVKVLHRDIKANNVLLDKEMNARLGDFGLALMHEHHGEIATTTKVLGTLGYIAPEVIRTGRASTMSDVFGFGILLLEVICGRRPIEEHKPGLIEWVESLMVLGQLHNAVDERLKDKGGYTIEEAERFLHLGLLCSNSDPSVRPRMRQVVKMLEGEMYNTESDEENMEKGLLRRIKSAAMWTKSESGLRNIDHPTFEDIKIFSYNSESTTSGSSSIPQGSQSESDSNIIREGWQCCRF 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04080 704 Pfam Protein kinase domain 360 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04080 704 Gene3D Transferase(Phosphotransferase) domain 1 426 644 - -
Trre11g04080 704 Pfam Legume lectin domain 28 266 IPR001220 GO:0030246
Trre11g04080 704 FunFam L-type lectin-domain containing receptor kinase S.4 426 632 - -
Trre11g04080 704 MobiDBLite consensus disorder prediction 673 692 - -
Trre11g04080 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Trre11g04080 704 ProSiteProfiles Protein kinase domain profile. 351 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04080 704 CDD STKc_IRAK 360 621 - -
Trre11g04080 704 Gene3D - 26 276 - -
Trre11g04080 704 SMART serkin_6 351 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04080 704 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 313 425 - -
Trre11g04080 704 Gene3D Phosphorylase Kinase; domain 1 314 425 - -
Trre11g04080 704 SUPERFAMILY Protein kinase-like (PK-like) 328 621 IPR011009 -
Trre11g04080 704 CDD lectin_legume_LecRK_Arcelin_ConA 28 265 IPR001220 GO:0030246
Trre11g04080 704 PANTHER - 42 623 - -
Trre11g04080 704 FunFam L-type lectin-domain containing receptor kinase S.4 26 270 - -
Trre11g04080 704 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 265 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04080 Trre-Chr11 53809621 53811735 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04080 25 567 Receptor kinase-like Gene Family AT4G04960 56.261 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre11g04080 Pkinase 5.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04080 - - gmx:100776006 992.26