Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04079 ATGCCTCAACTTAAGCTACTTTTCATTCTTCTTCACACTTTAACCATAATTATATCTTGTATTTCCACTACTGAATTTGTCTATAATACAAACTTCAACTCAACAAACATTATCCTATATGGAAATGTCACCATTAACAAATCCATTCTAACTCTCCTTAATGATACTTCCACTTCCTTCTCGATAGCTCGTGCTTTTTACCCTCACAAAGTACCTACAAAACCACCAAACTCTTCCACTCTTCTCCCCTTTGCTACTTCCTTCATTTTCTCAGTTTCACCTATCAAACACTTTATCCCAGGACATGGCTTTGCCTTCATATTTACACCTTCAAGACATCTAAATGGAACAACACCGGCCGAGTATTCGACCGAGTATATTGGTTTATTCAATTTCAAGAATGATAATAAATCTAACAACCATGTTTTAGCAGTTGAATTTGATATTGTTAAAAACGAACAATTCAACGATACAAATGATAATCATGTTGGTATCGACGTAAACTCGCTTACTTCCTTAACTTCACATGAGGCTGGCTACTGGAGTGGAAAACATGACAATGAATTTAAGGTGTTGAAGATAAAAAGTGGAGAAAACTATCAGGTATGGATTGAGTTTAACCATTCTCATATAAACGTTACAATGGCTCGGGCAGGACGAAAGAGGCCTCATGTGCCTCTTATCAGTATGAATCTTAACCTTTCTGGTGTTCTTATGGATGAAACTTATGTTGGATTCAGTGCAGCCAATGGGTTGAAAAAAGATAGTGTTAAGATTCTTGCTTGGAGCTATAGTAATAAGAATTTTTCAATTGGTGATGCTTTAGTTACACACAACTTGCCTTCATTTGTCCCTCATAAAGGATGGTTTTCTGGAGAAAAAGCTATAGCTGTAGAAATAACCGGTGTTGTCTGTGTCTTAATCATTGGCTGCGCTGCGTTATTCATTCTCTATAGGGGAAATAGAGAAGAAGAGATTGAAGATTGGGAAATAGAGTATTGGCCACACAGGATTAGTTTCCAAGAGATTCATGCCGCAACCGGAGGGTTCTCTGAAGAGAATGTGGTTTTTGTAGGAAGGAACAAAAGTGTACATAAAGGGATGTTGCAAGGAGTTGAAGTCGCGGTCAAGAGAATCCCTCACCAAAGAGAAGTGATGAGAGAGTTTTTGGCCGAGGTTTCAAGCTTAGGAAGATTGAAACACAGAAATTTAGTAGGGTTTCGAGGTTGGTGCAAAGAAGACAAAGAAAACTTGATTCTAGTTTATGATTTCATGAATAATGGAAGTTTAGACAAATGGATCTTTGAGTGCGAAGAAGGAAAAATGCTAACATGGGAAGAGAGGATTAAAGTTTTGAAAAATGTAGCCGTGGGGATTCTATACATGCATGAAGATTGGGAAGTTAAGGTCTTACATAGGGACATCAAAGCAAGCAATGTTCTACTTGACAAGGACATGAATGCTAGATTGGGAGATTTTGGTTTGGCTCTTATGCATGAGCATCATGGAGAAGTGGCTAGTACAACGAAAGTACTAGGGACATTAGGATACATTGCTCCGGAAGTGATTCAAATAGGACGAGCATCGACTATGTCTGATGTGTTTGGCTTTGGAATATTGGTATTGGAAGTAATTTGCGGACGAAGACCTATTGAAGAACATAAGCCAGGGATAATCGAATGGGTGGAGTCCTTAATGGTGCTTGATCAATTGCACAATGCTGTTGATGAAAGGTTAAAAGACAAAGGAGGATACCCTATTGAGGAAGCTGAGAGATTGCTTCATTTGGGTTTGTTGTGTTCAAATTTCGACCCTAGTGTTAGACCAATAATGAGACAGGTTGTCAAAATGTTGGAGGGAGAAACGGACAACATCGAATCTGATGAAGAAAATATAGAAACAAGTTTGCTTCGAAGAATACAATCAGCTGCAATGTGGCCTAGAACCGAAAGCGGACTTCAACACAGAGATCACCCTACTTTAGAAGATATTCGATTGTTCAGTTATAAATCTAAGACGTCAACAAGCGGTTCAAGTACCATTCCGCAAGCACCACAATCGGATTCAGATATCATTGAAGAAGGCCGGTAA 2091 0.3869 MPQLKLLFILLHTLTIIISCISTTEFVYNTNFNSTNIILYGNVTINKSILTLLNDTSTSFSIARAFYPHKVPTKPPNSSTLLPFATSFIFSVSPIKHFIPGHGFAFIFTPSRHLNGTTPAEYSTEYIGLFNFKNDNKSNNHVLAVEFDIVKNEQFNDTNDNHVGIDVNSLTSLTSHEAGYWSGKHDNEFKVLKIKSGENYQVWIEFNHSHINVTMARAGRKRPHVPLISMNLNLSGVLMDETYVGFSAANGLKKDSVKILAWSYSNKNFSIGDALVTHNLPSFVPHKGWFSGEKAIAVEITGVVCVLIIGCAALFILYRGNREEEIEDWEIEYWPHRISFQEIHAATGGFSEENVVFVGRNKSVHKGMLQGVEVAVKRIPHQREVMREFLAEVSSLGRLKHRNLVGFRGWCKEDKENLILVYDFMNNGSLDKWIFECEEGKMLTWEERIKVLKNVAVGILYMHEDWEVKVLHRDIKASNVLLDKDMNARLGDFGLALMHEHHGEVASTTKVLGTLGYIAPEVIQIGRASTMSDVFGFGILVLEVICGRRPIEEHKPGIIEWVESLMVLDQLHNAVDERLKDKGGYPIEEAERLLHLGLLCSNFDPSVRPIMRQVVKMLEGETDNIESDEENIETSLLRRIQSAAMWPRTESGLQHRDHPTLEDIRLFSYKSKTSTSGSSTIPQAPQSDSDIIEEGR 696
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04079 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Trre11g04079 696 ProSiteProfiles Protein kinase domain profile. 350 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04079 696 Gene3D Transferase(Phosphotransferase) domain 1 425 642 - -
Trre11g04079 696 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 313 424 - -
Trre11g04079 696 Gene3D Phosphorylase Kinase; domain 1 317 424 - -
Trre11g04079 696 FunFam L-type lectin-domain containing receptor kinase V.9 22 274 - -
Trre11g04079 696 MobiDBLite consensus disorder prediction 672 687 - -
Trre11g04079 696 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 267 IPR013320 -
Trre11g04079 696 PANTHER - 42 622 - -
Trre11g04079 696 CDD lectin_legume_LecRK_Arcelin_ConA 24 265 IPR001220 GO:0030246
Trre11g04079 696 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Trre11g04079 696 Pfam Protein kinase domain 362 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04079 696 SMART serkin_6 350 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04079 696 SUPERFAMILY Protein kinase-like (PK-like) 326 619 IPR011009 -
Trre11g04079 696 Pfam Legume lectin domain 24 268 IPR001220 GO:0030246
Trre11g04079 696 Gene3D - 22 276 - -
Trre11g04079 696 MobiDBLite consensus disorder prediction 672 696 - -
Trre11g04079 696 FunFam L-type lectin-domain containing receptor kinase S.4 425 631 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre11g04079 Trre-Chr11 53801518 53803608 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04079 21 566 Receptor kinase-like Gene Family AT4G04960 52.305 0.0 544
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre11g04079 Pkinase 1e-39 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04079 - - gmx:100804553 964.14