LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre11g04079	ATGCCTCAACTTAAGCTACTTTTCATTCTTCTTCACACTTTAACCATAATTATATCTTGTATTTCCACTACTGAATTTGTCTATAATACAAACTTCAACTCAACAAACATTATCCTATATGGAAATGTCACCATTAACAAATCCATTCTAACTCTCCTTAATGATACTTCCACTTCCTTCTCGATAGCTCGTGCTTTTTACCCTCACAAAGTACCTACAAAACCACCAAACTCTTCCACTCTTCTCCCCTTTGCTACTTCCTTCATTTTCTCAGTTTCACCTATCAAACACTTTATCCCAGGACATGGCTTTGCCTTCATATTTACACCTTCAAGACATCTAAATGGAACAACACCGGCCGAGTATTCGACCGAGTATATTGGTTTATTCAATTTCAAGAATGATAATAAATCTAACAACCATGTTTTAGCAGTTGAATTTGATATTGTTAAAAACGAACAATTCAACGATACAAATGATAATCATGTTGGTATCGACGTAAACTCGCTTACTTCCTTAACTTCACATGAGGCTGGCTACTGGAGTGGAAAACATGACAATGAATTTAAGGTGTTGAAGATAAAAAGTGGAGAAAACTATCAGGTATGGATTGAGTTTAACCATTCTCATATAAACGTTACAATGGCTCGGGCAGGACGAAAGAGGCCTCATGTGCCTCTTATCAGTATGAATCTTAACCTTTCTGGTGTTCTTATGGATGAAACTTATGTTGGATTCAGTGCAGCCAATGGGTTGAAAAAAGATAGTGTTAAGATTCTTGCTTGGAGCTATAGTAATAAGAATTTTTCAATTGGTGATGCTTTAGTTACACACAACTTGCCTTCATTTGTCCCTCATAAAGGATGGTTTTCTGGAGAAAAAGCTATAGCTGTAGAAATAACCGGTGTTGTCTGTGTCTTAATCATTGGCTGCGCTGCGTTATTCATTCTCTATAGGGGAAATAGAGAAGAAGAGATTGAAGATTGGGAAATAGAGTATTGGCCACACAGGATTAGTTTCCAAGAGATTCATGCCGCAACCGGAGGGTTCTCTGAAGAGAATGTGGTTTTTGTAGGAAGGAACAAAAGTGTACATAAAGGGATGTTGCAAGGAGTTGAAGTCGCGGTCAAGAGAATCCCTCACCAAAGAGAAGTGATGAGAGAGTTTTTGGCCGAGGTTTCAAGCTTAGGAAGATTGAAACACAGAAATTTAGTAGGGTTTCGAGGTTGGTGCAAAGAAGACAAAGAAAACTTGATTCTAGTTTATGATTTCATGAATAATGGAAGTTTAGACAAATGGATCTTTGAGTGCGAAGAAGGAAAAATGCTAACATGGGAAGAGAGGATTAAAGTTTTGAAAAATGTAGCCGTGGGGATTCTATACATGCATGAAGATTGGGAAGTTAAGGTCTTACATAGGGACATCAAAGCAAGCAATGTTCTACTTGACAAGGACATGAATGCTAGATTGGGAGATTTTGGTTTGGCTCTTATGCATGAGCATCATGGAGAAGTGGCTAGTACAACGAAAGTACTAGGGACATTAGGATACATTGCTCCGGAAGTGATTCAAATAGGACGAGCATCGACTATGTCTGATGTGTTTGGCTTTGGAATATTGGTATTGGAAGTAATTTGCGGACGAAGACCTATTGAAGAACATAAGCCAGGGATAATCGAATGGGTGGAGTCCTTAATGGTGCTTGATCAATTGCACAATGCTGTTGATGAAAGGTTAAAAGACAAAGGAGGATACCCTATTGAGGAAGCTGAGAGATTGCTTCATTTGGGTTTGTTGTGTTCAAATTTCGACCCTAGTGTTAGACCAATAATGAGACAGGTTGTCAAAATGTTGGAGGGAGAAACGGACAACATCGAATCTGATGAAGAAAATATAGAAACAAGTTTGCTTCGAAGAATACAATCAGCTGCAATGTGGCCTAGAACCGAAAGCGGACTTCAACACAGAGATCACCCTACTTTAGAAGATATTCGATTGTTCAGTTATAAATCTAAGACGTCAACAAGCGGTTCAAGTACCATTCCGCAAGCACCACAATCGGATTCAGATATCATTGAAGAAGGCCGGTAA	2091	0.3869	MPQLKLLFILLHTLTIIISCISTTEFVYNTNFNSTNIILYGNVTINKSILTLLNDTSTSFSIARAFYPHKVPTKPPNSSTLLPFATSFIFSVSPIKHFIPGHGFAFIFTPSRHLNGTTPAEYSTEYIGLFNFKNDNKSNNHVLAVEFDIVKNEQFNDTNDNHVGIDVNSLTSLTSHEAGYWSGKHDNEFKVLKIKSGENYQVWIEFNHSHINVTMARAGRKRPHVPLISMNLNLSGVLMDETYVGFSAANGLKKDSVKILAWSYSNKNFSIGDALVTHNLPSFVPHKGWFSGEKAIAVEITGVVCVLIIGCAALFILYRGNREEEIEDWEIEYWPHRISFQEIHAATGGFSEENVVFVGRNKSVHKGMLQGVEVAVKRIPHQREVMREFLAEVSSLGRLKHRNLVGFRGWCKEDKENLILVYDFMNNGSLDKWIFECEEGKMLTWEERIKVLKNVAVGILYMHEDWEVKVLHRDIKASNVLLDKDMNARLGDFGLALMHEHHGEVASTTKVLGTLGYIAPEVIQIGRASTMSDVFGFGILVLEVICGRRPIEEHKPGIIEWVESLMVLDQLHNAVDERLKDKGGYPIEEAERLLHLGLLCSNFDPSVRPIMRQVVKMLEGETDNIESDEENIETSLLRRIQSAAMWPRTESGLQHRDHPTLEDIRLFSYKSKTSTSGSSTIPQAPQSDSDIIEEGR	696

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre11g04079	696	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	470	482	IPR008271	GO:0004672\|GO:0006468
	Trre11g04079	696	ProSiteProfiles	Protein kinase domain profile.	350	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre11g04079	696	Gene3D	Transferase(Phosphotransferase) domain 1	425	642	-	-
	Trre11g04079	696	FunFam	Putative L-type lectin-domain containing receptor kinase VII.2	313	424	-	-
	Trre11g04079	696	Gene3D	Phosphorylase Kinase; domain 1	317	424	-	-
	Trre11g04079	696	FunFam	L-type lectin-domain containing receptor kinase V.9	22	274	-	-
	Trre11g04079	696	MobiDBLite	consensus disorder prediction	672	687	-	-
	Trre11g04079	696	SUPERFAMILY	Concanavalin A-like lectins/glucanases	24	267	IPR013320	-
	Trre11g04079	696	PANTHER	-	42	622	-	-
	Trre11g04079	696	CDD	lectin_legume_LecRK_Arcelin_ConA	24	265	IPR001220	GO:0030246
	Trre11g04079	696	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	20	-	-
	Trre11g04079	696	Pfam	Protein kinase domain	362	616	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre11g04079	696	SMART	serkin_6	350	618	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre11g04079	696	SUPERFAMILY	Protein kinase-like (PK-like)	326	619	IPR011009	-
	Trre11g04079	696	Pfam	Legume lectin domain	24	268	IPR001220	GO:0030246
	Trre11g04079	696	Gene3D	-	22	276	-	-
	Trre11g04079	696	MobiDBLite	consensus disorder prediction	672	696	-	-
	Trre11g04079	696	FunFam	L-type lectin-domain containing receptor kinase S.4	425	631	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre11g04079	Trre-Chr11	53801518	53803608	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre11g04079	21	566	Receptor kinase-like Gene Family	AT4G04960	52.305	0.0	544

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Trre11g04079		Pkinase	1e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre11g04079	-		-	gmx:100804553	964.14